Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00919 ATGTCTTCTGCTGGTGTATCCACTCTTAGTCCTGTTTCAAGGGAGACATTGTTGTCTCCAACAAATGGATTTTGTAATCCACTGCACTTGTCTGCTGATCATCACGAGTTCATTTTCGTGTATCTTTCGTATTCGGGATCTTTGTCTCCTATGCGTGTTCTACCCTCGGATACGATTGAGTCTGTGAAGCTCAAGATTCAAAGGAATGAGGGGgtgacaaacaaacaaaagttGGTTTGTAATGGTCGCGAGTTATCACGTAGCAATTCTTTGCTCAAGGATTATGGGGTTACCGAAGGAAATGTATTGCATTTGGTGATTCGACTAACAGATCTTCAGACTATCAGTGTGAGAACTGCCTGTGGGAAGGAGTTTACCTTTCAGGTTGAAAGGTGCAGGGATGTTGGGTATGTTAAGCAACAGATTGCAAAAAAGGAAAACGAGCTTGCTGATCCTGAACAGCAGGAGGTTGTGTGTAACGGGGAGCTGCTTGATGATCAGAAGCTTGTTGATGATATCTGTAGCAAATATAATGATGCAGTGATACATCTTTTTGTTAGAACAAAATATGCGGATGTTAGTACAGGACTCGAAGAGGTATCTATTGCAGCAAAAGAATTGAATGAtactaacaactttgatgctaaTGAAAGTGACTATGAGAGGAAATACGATGCTGGTAAAGAAGATGCGAGAAGGGAGTATGAAGCTATCGAGCAAATTATGTCAAGAAAAGCTCTTGACAGAGGTCTTCTTTTGGAGCCGGTTATTGTTAACCCTAAGGTTGAATTGTCTTCAGAGGTTTGGGATATGATAGACACGACATATGACGGACTAGATAATGGGAATTCTCCAATCAGATCGTCCGAGGGAACAGGAGGGGCTTACTTTATGCTAGACTCAACAGGGCAAAAGTATGTATCGGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTATGAACAACCCTAGAGGTTTACCTTTGTCGTTAGACGGTGAGGgcttaaaaaagggtacaagaGTTGGCCAAGGAGCTTTCAGGGAAGTTGCTGCTTATATTCTGGACCATCCAATGGGTGGCCGCCGATCATTATTTGGTGATGATAAAGGCTTTGCTGGTGTCCCCCCGACTGTTATGGCAAAGTGCTTGCACGAAGGATTTAACCATCCAGAAGGTTTGACTGCTAAGTTTGGTTCCTTGCAAATGTTCATGGAGAATAATGGAAGTTGTGAGGATATGGGACCTGGTGCTTTCCCGGTGAAGGAAGTGCACAAAATCACCGTTCTGGACATGAGACTTGCAAATGCAGATAGGCATGCTGGGAATATTTTGATTGGCAGAGAGAAGGAAAATGACCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCCTCCCCACTAGTTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCTCAAGCTCGCCAGCCATACTCTCCAGAGGTCATTGACTACATAAAGTCCCTTGACGCTGAAGAAGATATTGCTCTTCTGAAGTTTCACGGATGGGATCTGCCACTCGAATGCGCCCGCACTCTCCGAATCTCAACCATGCTTCTGAAAAAAGGAGTGGAAAAAGGGATGACCCCTTTTGCCATTGGAAGCCTAATGTGCCGAGAATCGTTGAACAAGGAATCTGTGATCGAAGGAATTGTTAAAGCAGCACTTGATTCTGTTCTTCCTTGTACCAGTGAAGCTACTTTTATGGATGCTGTTTCTGAGATTATGGACCAGCACCTTGATGAGATCACCGGCAATTATAATTCTTAA 1794 0.4214 MSSAGVSTLSPVSRETLLSPTNGFCNPLHLSADHHEFIFVYLSYSGSLSPMRVLPSDTIESVKLKIQRNEGVTNKQKLVCNGRELSRSNSLLKDYGVTEGNVLHLVIRLTDLQTISVRTACGKEFTFQVERCRDVGYVKQQIAKKENELADPEQQEVVCNGELLDDQKLVDDICSKYNDAVIHLFVRTKYADVSTGLEEVSIAAKELNDTNNFDANESDYERKYDAGKEDARREYEAIEQIMSRKALDRGLLLEPVIVNPKVELSSEVWDMIDTTYDGLDNGNSPIRSSEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAMNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYILDHPMGGRRSLFGDDKGFAGVPPTVMAKCLHEGFNHPEGLTAKFGSLQMFMENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILIGREKENDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEVIDYIKSLDAEEDIALLKFHGWDLPLECARTLRISTMLLKKGVEKGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPCTSEATFMDAVSEIMDQHLDEITGNYNS 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00919 597 ProSiteProfiles Ubiquitin domain profile. 38 108 IPR000626 GO:0005515
Tsu08g00919 597 Pfam Ubiquitin family 44 109 IPR000626 GO:0005515
Tsu08g00919 597 Pfam Ubiquitin family 115 188 IPR000626 GO:0005515
Tsu08g00919 597 Gene3D - 114 190 - -
Tsu08g00919 597 SUPERFAMILY Protein kinase-like (PK-like) 429 593 IPR011009 -
Tsu08g00919 597 Gene3D - 37 113 - -
Tsu08g00919 597 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 282 575 IPR000403 -
Tsu08g00919 597 PRINTS Ubiquitin signature 47 67 IPR019956 -
Tsu08g00919 597 PRINTS Ubiquitin signature 89 110 IPR019956 -
Tsu08g00919 597 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 595 - -
Tsu08g00919 597 ProSiteProfiles Ubiquitin domain profile. 113 172 IPR000626 GO:0005515
Tsu08g00919 597 SUPERFAMILY Ubiquitin-like 28 109 IPR029071 -
Tsu08g00919 597 SUPERFAMILY Ubiquitin-like 108 188 IPR029071 -
Tsu08g00919 597 SMART ubq_7 113 187 IPR000626 GO:0005515
Tsu08g00919 597 SMART ubq_7 38 108 IPR000626 GO:0005515
Tsu08g00919 597 Pfam Phosphatidylinositol 3- and 4-kinase 291 540 IPR000403 -
Tsu08g00919 597 CDD Ubl_ubiquitin_like 115 185 - -
Tsu08g00919 597 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 595 IPR044571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00919 Tsu-Chr8 10086474 10090128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00919 1 594 Acyl Lipid Metabolism Gene Families AT5G24240 54.409 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00919 - - gmx:100815111 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00919 08 10086474 10090128 Tsu08g00919 08 10086474 10090128 ECH
Tsu08g00919 08 10086474 10090128 Tsu07g04688 07 51336582 51339797 ECH
Tsu05g00200 05 1453814 1461000 Tsu08g00919 08 10086474 10090128 ECH
Tsu02g00359 02 3022497 3024889 Tsu08g00919 08 10086474 10090128 ECH
Tsu07g04688 07 51336582 51339797 Tsu08g00919 08 10086474 10090128 PCT