Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00200 ATGAAGAATAAACATCATCGTGATTCAAATATCAAATTCAAATACAAATGTCAAGGAGACTATGCTAGCAAATTTTTTGGCCTATCTTTCTCTTTCCTATTTTCAATTTGGTGGCTCATATCCTTCTTCCAATCCAGGCTTCACCTTGTTCGTGGTTCTTCTGGAGGAGAAGCTGCGTTAGAGCTCAATGAATCATCTACCATTAGTCAGGAACTAAAAAAACCATTGTATTCAGTTGCTGAAACAAGTAGTTTAGAACAAGTATTTTGGCGAGTTTTAGGTAATAATAGTAGTTTAGTGTGCAAGATACAATCTCGACATGAGGAAAAGAAACTTCAATCATCACATCACGAAGCATTAGGAAATCGAGGTAAGAGTAATGAGGTGAACTCTGCGCCTGTTAACATAACACACCGCCTAGAATCAGATGGTTCTGTGTACAATTACGCTTCTGAGTCCAAAGGTGCAAAGGTAGTTGCACATAATAAAGAGGCTAAAGGTGCTAAAAACATACTAGGAAAGGATCATGACAAGTATCTGAGAAATCCTTGTTCTGTTGCTGATAAGTTTGTTATTATCGAACTTTCAGAAGAGACTTTGGTCGATACTGTCAAAATTGCGAATTTTGAGCATTATTCGTCTAACTTCAAGGAATTTGAATTGGCTGGTAGTTTGAATTTTCCAACTGAGTCGTGGAGTGCGCTAGGGAACTTTGTTGCTGCCAATGTTAAGCATGCGCAAGTCTTTAAGCTTCCTAAACCATATTTGGCGAGGTATTTGAAGTTGAGCTTGCTTAGTCATTATGGATCCGAGTTTTACTGCACACTTAGTGTTGTAGAAATTTACGGGATCAATGTTATCGAACGAATGCTTAAGGATCTAATAGTTACTTCTGTGGGATCGATTCCTAATAAGTTACAGGCTCATAATATTAGTGACATCAAAACCCCTTCGGTGAAATCAGAAGCCGATCAAATTGAAGGAAAAGGTAAAGAAGTTGAAATTAAGAATGTTGTTATAGCTGCTGAGATATCGAGCAATGACGACACTCAAAAGATCGACGTAGAAGTGACGACAAATCCAGTGATTGTGGACTTGGTTCCTGATCCTGTAATGGAACTTAGACAACAATTAAATGGTAGGATAACCGGTGACACTGTTCTTAAGATTTTGATGCAGAAAGTGAAATCAGTGGAAGTAAACTTATCTGAACTAGAGGATTACATCAAAGAATTGAATAAGAGACAAGATATTGTGATACCAGATCTTGAGAAAGAGATATCTAAATTATCAGAAAGTTTGGAACAAAGAAAGTCAGAGATCAATGATCTTCGACAGTCGAACACAAATATGGAAAAAGGAATATCTGAAGTTGAGTCATGGAAAGACGTTATCTCATCTCAACTTAATGAACTAGCTAGAGAAAATAACATGCTAAGCGAATCGATTCTGATCTATCTCACCGTTGACGGAGCAGTTACACCAATGCGTGTATTAGAATCAGATTCAATTGCATCTGTAAAAATGAGGATTCAAACACGAAAAGGTGTTTCGTGGAAAAAGCAAAATCTAGTTTCTAATGGAAGAGAGTTATCTCGTAATAATAATCTTGTTAAAGATTACGGTGTAACTTCCGGTAATGTCGTTCATTTGGTTCTTCGGCTTTCTGATATGATTTTTATCGTTGTTAGAACGATATGTGGTAAGGAATTTGAGATTCAGATTGATCGGAAGAGAAATGTTGCGCATCTTAaacaatgtattaaaaaaaaagggaaaggTTTTATTGATCTTGTTGAGGAAGAACAAGAATTTTTCTGCTATGGTGAAAAGCTTGATGATAGAAgaatttttgatgatatttgtaagaatgatgatgatgttattcATCTCATTGTTAAAAAATCAGCAAAAGTGAATGCTACAATTGTTCATAATAAAGATTTAGAGCTTTCTGTTGTTGCAgagaatcagaatcagaatttCAATCATCAGAATAATCAGAAtcataatcagaatcagaatGAGGTTGTTAAGGTTATAGAACAAAGACAACCctgtgattttgattttttgttagaACCAATTTTTGTGAACCATAggatcaatttttttccttttctatggGATATGATAGATTCAACTTTCAATGGTTTGAAGAAAGGAAATAAGCCTGTGAGATCTTCGGAAGGAACAGGTGGGACTTACTTCATGCAAGATTCGAAAGGTGTAGAGTATATTTCGGTTTTTAAGCCGATTGATGAGGAACCAATGGCGATTAATAATCCACGTGGTTTGCCTGTTTCGTCGAACGGTGAGGGTTTAAAGATTGGGACAAAGGTTGGAGAAGGAGCTGTTAGAGAAATTGCGGCCTATATATTGGATCATCCAAAGAATGGACCACGTTTGGTGTCCGGTGAAGCGGTTGGTTTTGCTGGTGTTCCACCTACGGTTATGGTTCGGTGTTTACACGAAGCGTTTAACTACTCTAATGGATCTTTGACGATGGATCATAAGGTGGGGTCTTTGCAGAAGTTTATGAGTAATGATGGTAATTGTGAGGATATTGGACCGGCAGCTTTTCCTGTCGACGAGGTGCATAAGATCAGTGTGCTTGATATAAGAATGGCGAATGCAGATAGGCATGCAGGGAATATATTGTTTAGAAAAGAGTCAAATGGTGAAATTCTGCTCATTCCCATTGATCATGGCTACTGTCTTCCTGAGAAATTTGAAGATTGCACATTTGATTGGCTTTATTGGCCTCAGGCGCGTCAGCCATATTCTCCCGATACAGTTGATTATATAAACTCTCTGGATGCTGAAAAGGACATAGAGCTTCTGAGACATTATGGTTGGGATGTCCCGGCTGAGTGTGCCAGAACACTCCGCATCTCCACAATGTTATTGAAGAAAGGGGTTGAGAGAGGACTCACTCCCTATGCCATTGGAAGCATCATGTGTAGAGAAAATTTGAACAAGAAATCAGTAATTGAGGAGATTGTCTGTGAAGCCCAGGAATCAATGCAACCCGACATGGAGGAAtctatttttctcaaatttgtaTCGCAGATCATGGATTCCCGCCTTGGTGAACTTTCGAaatag 3108 0.3629 MKNKHHRDSNIKFKYKCQGDYASKFFGLSFSFLFSIWWLISFFQSRLHLVRGSSGGEAALELNESSTISQELKKPLYSVAETSSLEQVFWRVLGNNSSLVCKIQSRHEEKKLQSSHHEALGNRGKSNEVNSAPVNITHRLESDGSVYNYASESKGAKVVAHNKEAKGAKNILGKDHDKYLRNPCSVADKFVIIELSEETLVDTVKIANFEHYSSNFKEFELAGSLNFPTESWSALGNFVAANVKHAQVFKLPKPYLARYLKLSLLSHYGSEFYCTLSVVEIYGINVIERMLKDLIVTSVGSIPNKLQAHNISDIKTPSVKSEADQIEGKGKEVEIKNVVIAAEISSNDDTQKIDVEVTTNPVIVDLVPDPVMELRQQLNGRITGDTVLKILMQKVKSVEVNLSELEDYIKELNKRQDIVIPDLEKEISKLSESLEQRKSEINDLRQSNTNMEKGISEVESWKDVISSQLNELARENNMLSESILIYLTVDGAVTPMRVLESDSIASVKMRIQTRKGVSWKKQNLVSNGRELSRNNNLVKDYGVTSGNVVHLVLRLSDMIFIVVRTICGKEFEIQIDRKRNVAHLKQCIKKKGKGFIDLVEEEQEFFCYGEKLDDRRIFDDICKNDDDVIHLIVKKSAKVNATIVHNKDLELSVVAENQNQNFNHQNNQNHNQNQNEVVKVIEQRQPCDFDFLLEPIFVNHRINFFPFLWDMIDSTFNGLKKGNKPVRSSEGTGGTYFMQDSKGVEYISVFKPIDEEPMAINNPRGLPVSSNGEGLKIGTKVGEGAVREIAAYILDHPKNGPRLVSGEAVGFAGVPPTVMVRCLHEAFNYSNGSLTMDHKVGSLQKFMSNDGNCEDIGPAAFPVDEVHKISVLDIRMANADRHAGNILFRKESNGEILLIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSPDTVDYINSLDAEKDIELLRHYGWDVPAECARTLRISTMLLKKGVERGLTPYAIGSIMCRENLNKKSVIEEIVCEAQESMQPDMEESIFLKFVSQIMDSRLGELSK 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00200 1035 ProSiteProfiles SUN domain profile. 126 286 IPR012919 -
Tsu05g00200 1035 ProSiteProfiles Ubiquitin domain profile. 559 638 IPR000626 GO:0005515
Tsu05g00200 1035 Gene3D - 560 650 - -
Tsu05g00200 1035 Pfam Sad1 / UNC-like C-terminal 161 283 IPR012919 -
Tsu05g00200 1035 Pfam Ubiquitin family 489 555 IPR000626 GO:0005515
Tsu05g00200 1035 Pfam Phosphatidylinositol 3- and 4-kinase 731 982 IPR000403 -
Tsu05g00200 1035 Gene3D - 158 293 - -
Tsu05g00200 1035 MobiDBLite consensus disorder prediction 110 133 - -
Tsu05g00200 1035 CDD Ubl_ubiquitin_like 561 632 - -
Tsu05g00200 1035 ProSiteProfiles Ubiquitin domain profile. 485 558 IPR000626 GO:0005515
Tsu05g00200 1035 SMART ubq_7 483 554 IPR000626 GO:0005515
Tsu05g00200 1035 SMART ubq_7 559 634 IPR000626 GO:0005515
Tsu05g00200 1035 Gene3D - 450 558 - -
Tsu05g00200 1035 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 474 1035 IPR044571 -
Tsu05g00200 1035 SUPERFAMILY Ubiquitin-like 534 635 IPR029071 -
Tsu05g00200 1035 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 722 1017 IPR000403 -
Tsu05g00200 1035 Coils Coil 420 447 - -
Tsu05g00200 1035 SUPERFAMILY Galactose-binding domain-like 185 280 IPR008979 -
Tsu05g00200 1035 Coils Coil 388 415 - -
Tsu05g00200 1035 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 474 1035 - -
Tsu05g00200 1035 SUPERFAMILY Protein kinase-like (PK-like) 871 1033 IPR011009 -
Tsu05g00200 1035 SUPERFAMILY Ubiquitin-like 488 556 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00200 Tsu-Chr5 1453814 1461000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00200 479 1034 Acyl Lipid Metabolism Gene Families AT5G24240 54.741 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00200 - - gmx:100787492 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00200 05 1453814 1461000 Tsu05g00200 05 1453814 1461000 ECH
Tsu05g00200 05 1453814 1461000 Tsu08g00919 08 10086474 10090128 ECH
Tsu05g00200 05 1453814 1461000 Tsu07g04688 07 51336582 51339797 ECH
Tsu05g00200 05 1453814 1461000 Tsu02g00359 02 3022497 3024889 PCT