Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03340 atgtcaAAACAAACATATAGTGTATGTTTATGTTGGCGTAGAAGATTCAAACTAGCTTTATCAGAAGCTCCACAAGAGATCAAGACCCTTTTCAACAATTACTCAGAAAATGATCTTATGACAGCTACAAACCTTAAAAGATTCTTAATTGAAGTTCAAAAACAAGAACAAGCTACTGAAGAAGAAGCACAAGCTATCATTGATAGTTTCAAACATTTTCATAGAAGGGGTGCTGGACTTAATCTTGAAActtttttcaagtttttgtttAGTGACAGTAATCTTTCtctttcaccttcaattgggGTGCACCATGACATGACATTACCTTTGTCtcattatttcatatatacTGGCCACAATTCCTATCTAACTGGAAATCAGCTGAGCAGTGACTGCAGTGACGTTCCGATCGTGAACGCATTGAAGAGAGGTGTGAGAGTAATTGAGCTGGACTTATGGCCTAATGCATCAAAGGATAACGTCGATGTTCTTCATGGGAGGACATTGACTACACCTGTAGAGCTCATTAGATGTTTGAGGTCTATTAAGGAACATGCCTTTGTCGCATCCGAATATCCGGTTGTAATAACCCTAGAAGACCATCTTACTCCAGATCTTCAGGCTAAAGTGGCTGAGATGGTTACTCAAACATTTGGAGAGATACTATTTACTCCTGGCTCGGAAAACTTGAAGGAATTTCCTTCTCCCGAATCACTAAAAAAGAGGATTATTATATCAACTAAACCACCTAAGGAGTACCTTGAGATAAAAGAAGTAAAGGAAAAAGAGGATGATTCACTGCATGATTCACTGCAAGAAAAGGCTTCGGGCGACGATGAAGCTTGGGGGAAGGAGATCCCGAGCTTCAAATGTGGTTCGATATCTGATTACAAGGTAAACAACTTGGATAAAGATATTCACGATGAGGAAGATCTTTACGAATCGGACAAGTCACAACATCATAATGTAGCTCCGGAATATAAAGGTTTAATTGCCATTCATGCTGGAAAGTCGAAAGGAGGAATAGAGGCATGGTTCAAAGTAGATCCTGATAAAGCTAAGCGTATAAGTTTAAGTGAGCAACAACTTGAAAAGGCTGCTATAACTCATGGAAAAGAAATTGTCAGGTTTACTCAGCGGAATATTCTGAGGGTGTTTCCAAAAGGTACTCGCATTGACTCGTCAAATTATAACCCGTTAATTGGTTGGATTCACGGTGCTCAAATGGTTGCATTCAATATGCAGGTTTCTATTATTTCCCTTTTACGATTCTTCAAGCTACCAAGTACTAACAAAATATACTGA 1308 0.3723 MSKQTYSVCLCWRRRFKLALSEAPQEIKTLFNNYSENDLMTATNLKRFLIEVQKQEQATEEEAQAIIDSFKHFHRRGAGLNLETFFKFLFSDSNLSLSPSIGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDVPIVNALKRGVRVIELDLWPNASKDNVDVLHGRTLTTPVELIRCLRSIKEHAFVASEYPVVITLEDHLTPDLQAKVAEMVTQTFGEILFTPGSENLKEFPSPESLKKRIIISTKPPKEYLEIKEVKEKEDDSLHDSLQEKASGDDEAWGKEIPSFKCGSISDYKVNNLDKDIHDEEDLYESDKSQHHNVAPEYKGLIAIHAGKSKGGIEAWFKVDPDKAKRISLSEQQLEKAAITHGKEIVRFTQRNILRVFPKGTRIDSSNYNPLIGWIHGAQMVAFNMQVSIISLLRFFKLPSTNKIY 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03340 435 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 249 IPR000909 -
Tsu05g03340 435 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 355 417 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu05g03340 435 Pfam Phosphoinositide-specific phospholipase C, efhand-like 25 71 IPR015359 -
Tsu05g03340 435 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 358 416 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu05g03340 435 SUPERFAMILY EF-hand 17 100 IPR011992 -
Tsu05g03340 435 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 422 IPR001192 GO:0035556
Tsu05g03340 435 Gene3D - 22 100 - -
Tsu05g03340 435 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 422 - -
Tsu05g03340 435 SUPERFAMILY PLC-like phosphodiesterases 105 417 IPR017946 GO:0006629|GO:0008081
Tsu05g03340 435 PRINTS Phospholipase C signature 404 422 IPR001192 GO:0035556
Tsu05g03340 435 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Tsu05g03340 435 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Tsu05g03340 435 PRINTS Phospholipase C signature 233 250 IPR001192 GO:0035556
Tsu05g03340 435 PRINTS Phospholipase C signature 383 404 IPR001192 GO:0035556
Tsu05g03340 435 SMART plcy_3 328 424 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu05g03340 435 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 249 - -
Tsu05g03340 435 SMART plcx_3 105 249 IPR000909 -
Tsu05g03340 435 Gene3D Phosphatidylinositol (PI) phosphodiesterase 102 422 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03340 Tsu-Chr5 44701228 44705710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03340 1 416 Acyl Lipid Metabolism Gene Families AT3G08510 63.309 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03340 K05857 - gmx:547864 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01872 03 19331105 19335402 Tsu05g03340 05 44701228 44705710 ECH
Tsu05g02814 05 38354427 38361496 Tsu05g03340 05 44701228 44705710 ECH
Tsu05g03340 05 44701228 44705710 Tsu05g03340 05 44701228 44705710 ECH
Tsu03g01873 03 19336890 19342332 Tsu05g03340 05 44701228 44705710 PCT