Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01873 ATGTCAAAGAATCAATTACTTCAATTCATAGTGGAGTATCAAGGAGAACAAAATTGCACCTTATTGGATTTGGAACCAATTTATAAAAAGGTTTTGCAAAATGGAAGTTCTAGAAATGAAAGTAGTTGCAACATTGCTGGACTTAGTTTAGATAAGTTCATTGATTTTCTGCTTATTGATGATTTCAAATTCAATGGTCCTATAAAAGATGAGGTGCCGAATGAAAGTGAATCATCTGAAGATGAAACATGGGAATTGCAAGATTCTTTGGTTAAACCGAAAACTGAGGATAAGCATGTAGGTGATGAAGACAAGGAAGATATAAATACAAGTGATTTCAAATCAAACCAGCAAATTCCACGCGAATACAGACATTTGATTACAATCCATGGTGGGAAATCAGAAGGTACCATGAAAGATAGACTAAAAGTTGATGGTGGTAAAGTTAGAAGGCTAAGTTTGAGTGAAAAGAAACTCAAAACTGCTTCTGAATCTCATGGAGCTGACCTTATTAGgttcacacaaaaaaatatcCTTAGAATTTTTCCTAAAGGAGAACGCGTACAATCCTCCAATTTTAGGCCACATTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATTTAATATGCAGGGGTATGGCAAATCACTCTGGTTGATGCAAGGGATGTTCAAAGCAAATGGAGGATGCGGTTATGTGAAAAAACCTGAATTTCTAATTCAAGAAGGGGCAGGCAATGAGGTTTTTGATCCTAAAAGAATATTGCCAGTGAAGCAGATATTAAAAGTAAAAGTATACAAAGGTGTTGGCTGGAAGTCAGATTTTAGTCGAACACACTTCGATCAATTCTCTCCACCAGACTTTTACACAAAGGTTTGTATTGTTGGAGTGGGAGCTGATTGTGCGAAGAACAAAACACGTGTAAAGAAGGACAATTGGTATCCGATTTGGGACGAAGAGTTCGAATTCAAGTTGACTGTTCCGGAGCTCGCGTTGCTTCGGATCGAAGTAAATGATAAAGATCAGACAAAAGACGATTTTGCTGGACAAACTTGTTTGCCTGTATCAGAGCTGAGATGCGGATTTCGGTCTGTTCGTTTGTGTGACAGAAAAGGAAAGGAATTGAAGTCTGTCAAGCTTTTACTTCGCTTCCAACTTGAAACTTTATAG 1170 0.3726 MSKNQLLQFIVEYQGEQNCTLLDLEPIYKKVLQNGSSRNESSCNIAGLSLDKFIDFLLIDDFKFNGPIKDEVPNESESSEDETWELQDSLVKPKTEDKHVGDEDKEDINTSDFKSNQQIPREYRHLITIHGGKSEGTMKDRLKVDGGKVRRLSLSEKKLKTASESHGADLIRFTQKNILRIFPKGERVQSSNFRPHLGWMYGAQMVAFNMQGYGKSLWLMQGMFKANGGCGYVKKPEFLIQEGAGNEVFDPKRILPVKQILKVKVYKGVGWKSDFSRTHFDQFSPPDFYTKVCIVGVGADCAKNKTRVKKDNWYPIWDEEFEFKLTVPELALLRIEVNDKDQTKDDFAGQTCLPVSELRCGFRSVRLCDRKGKELKSVKLLLRFQLETL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01873 389 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 72 IPR001192 GO:0035556
Tsu03g01873 389 ProSiteProfiles C2 domain profile. 241 369 IPR000008 -
Tsu03g01873 389 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 72 389 IPR001192 GO:0035556
Tsu03g01873 389 Gene3D Phosphatidylinositol (PI) phosphodiesterase 32 253 IPR017946 GO:0006629|GO:0008081
Tsu03g01873 389 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 260 385 IPR035892 -
Tsu03g01873 389 Gene3D C2 domain 255 389 IPR035892 -
Tsu03g01873 389 SMART plcy_3 123 240 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu03g01873 389 CDD C2_PLC_like 258 387 - -
Tsu03g01873 389 Pfam C2 domain 260 358 IPR000008 -
Tsu03g01873 389 SUPERFAMILY PLC-like phosphodiesterases 88 251 IPR017946 GO:0006629|GO:0008081
Tsu03g01873 389 MobiDBLite consensus disorder prediction 70 113 - -
Tsu03g01873 389 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 152 238 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu03g01873 389 MobiDBLite consensus disorder prediction 85 111 - -
Tsu03g01873 389 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 72 389 - -
Tsu03g01873 389 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 72 - -
Tsu03g01873 389 PRINTS Phospholipase C signature 199 217 IPR001192 GO:0035556
Tsu03g01873 389 PRINTS Phospholipase C signature 178 199 IPR001192 GO:0035556
Tsu03g01873 389 PRINTS Phospholipase C signature 353 363 IPR001192 GO:0035556
Tsu03g01873 389 SMART C2_3c 260 367 IPR000008 -
Tsu03g01873 389 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 153 239 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01873 Tsu-Chr3 19336890 19342332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01873 65 387 Acyl Lipid Metabolism Gene Families AT2G40116 58.434 1.71e-132 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01873 K05857 - gmx:100803435 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01873 03 19336890 19342332 Tsu05g03340 05 44701228 44705710 PCT