Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01872 ATGGTAACTCAAACATTTGGAGACATACTATTTTGTCCTAGCACAGAAGGCTTGAAGGAATTTCCTTCACCTGATTCACTTAAAAGAAGGATCATCATATCAACCAAGCCACCTAAGGAGTACCTTGAGGCAAAAGAAGGAAAGGAAAAGGAAGAATCACAGAAGGGAAAGCCtgcagatgatgaagaagcatgGGGCAAAGAAGTTCCTAGTTTGAGAGGGGGTACTATAGCTGATTACAAGAACACTGGGGATGATGACGATGATCTTAGtgacgacgatgatgatgatgacgaggAAAAGTTACGTCAAGATGGATCGGATGAATATAGACGTTTAATTGCTATTCATGCTGGGAAACCCAAAGGTGGAATAGTGGAATGTCTCAAAGTGGATCCTGATAAAGTTAGACGTCTAAGTTTAAGTGAATCACAGCTCGAAAAGGCTGCTGAAACATATGGAAGAGAAATTGTCAGGTTTACTCAGCAGAATATACTGAGAGTGTATCCGAAAGGTACACGCATTACCTCGTCAAATTATAATCCTTTAATTGGGTGGATGCATGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGGAGATCTCTATGGTTGATGCAAGGAATGTTTAAAGCCAATGGCAGATGTGGTTATGTTAAAAAACCAGATTTTCTATTAAAAACTGGTCCCATCAATGAGATTTTTGATCCTAAAGCTTCTTTGCCGGCGAAAACTACTTTGAAGGTGACTGTATATATGGGGGAAGGATGGTATTATGATTTCAAGCATACACACTTCGATCAATTCTCACCTCCGGACTTCTATGCAAGGGTTGGGATTGCGGGTGTCCCATCTGATACTGTTATGAAAAAAACTAAGTCAATAGAGGATAGTTGGTTGCCTTCTTGGAATGAGGTATTCCAGTTCAAACTTTCTGTTCCGGAGTTGGCGTTGCTTCGTATAGAAGTTCATGAGTATGACATGTCTGAGAAGGATGACTTTGGCGGGCAAACATGTTTACCTGTGTGGGAACTAAGAAGTGGAATTCGAGCAATTCCACTTCATACCCGCAAAGGTGATAAATACAACAATGTAAAGCTTCTCATGCGCTTTGAATTCATCTGA 1128 0.3901 MVTQTFGDILFCPSTEGLKEFPSPDSLKRRIIISTKPPKEYLEAKEGKEKEESQKGKPADDEEAWGKEVPSLRGGTIADYKNTGDDDDDLSDDDDDDDEEKLRQDGSDEYRRLIAIHAGKPKGGIVECLKVDPDKVRRLSLSESQLEKAAETYGREIVRFTQQNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGRCGYVKKPDFLLKTGPINEIFDPKASLPAKTTLKVTVYMGEGWYYDFKHTHFDQFSPPDFYARVGIAGVPSDTVMKKTKSIEDSWLPSWNEVFQFKLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAIPLHTRKGDKYNNVKLLMRFEFI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01872 375 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 247 374 IPR035892 -
Tsu03g01872 375 Gene3D C2 domain 243 375 IPR035892 -
Tsu03g01872 375 Gene3D Phosphatidylinositol (PI) phosphodiesterase 1 240 IPR017946 GO:0006629|GO:0008081
Tsu03g01872 375 CDD C2_PLC_like 245 374 - -
Tsu03g01872 375 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 375 - -
Tsu03g01872 375 SUPERFAMILY PLC-like phosphodiesterases 1 238 IPR017946 GO:0006629|GO:0008081
Tsu03g01872 375 SMART C2_3c 247 355 IPR000008 -
Tsu03g01872 375 ProSiteProfiles C2 domain profile. 228 357 IPR000008 -
Tsu03g01872 375 MobiDBLite consensus disorder prediction 85 103 - -
Tsu03g01872 375 Pfam C2 domain 248 348 IPR000008 -
Tsu03g01872 375 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 375 IPR001192 GO:0035556
Tsu03g01872 375 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 139 225 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu03g01872 375 SMART plcy_3 110 227 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu03g01872 375 MobiDBLite consensus disorder prediction 14 106 - -
Tsu03g01872 375 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 140 226 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Tsu03g01872 375 MobiDBLite consensus disorder prediction 22 68 - -
Tsu03g01872 375 PRINTS Phospholipase C signature 341 351 IPR001192 GO:0035556
Tsu03g01872 375 PRINTS Phospholipase C signature 20 37 IPR001192 GO:0035556
Tsu03g01872 375 PRINTS Phospholipase C signature 165 186 IPR001192 GO:0035556
Tsu03g01872 375 PRINTS Phospholipase C signature 186 204 IPR001192 GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01872 Tsu-Chr3 19331105 19335402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01872 1 375 Acyl Lipid Metabolism Gene Families AT3G55940 69.393 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01872 K05857 - gmx:547865 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01872 03 19331105 19335402 Tsu05g03340 05 44701228 44705710 ECH
Tsu05g02814 05 38354427 38361496 Tsu03g01872 03 19331105 19335402 ECH
Tsu03g01872 03 19331105 19335402 Tsu03g01872 03 19331105 19335402 ECH
Tsu03g01872 03 19331105 19335402 Tsu05g03339 05 44684207 44688986 PCT