Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03217 ATGGTGTtgaagaaaaatagaaacaatgGACTTGGGGGCTTTCAGGTCCCTAGATGTCCAAGATCTGCAAGAACGAGGGTTCCATTTAAGAAACCAGTCGAGGATGACCGCAGTTGTGCTTTTGAACTACTTGCATCTTTAGCCGGCGAGTTGTTGAAGGAGAGTGAAAGTTCCGCTTCTAGCAATGCATCTGAAGTTAAACTTTTACCGGAAGAGCGATTTCGTAATGGAAGCTGTGAAGAAAAAAGCAGTGAGAATGAGAAACATCTTGAGATTGCTGAGGCTGATTGTATAATAGAATGCATTTCAGCTAACAATGACGTGAAGTCAGAAATTTTCAAATTGGAGAATAAGTTTGGAAATCATTCTGATACTAATAGAGTCATAGAAGTGCCGAACGATTCGGAGGCTGGCCGTTCAGGCTTCGAGCGATTATCTGTGGATGATAAGTTTAGTTTGAAGGATCCGTTGAAATTAGGTGTTAACTCTCCTTCGTTAGTTAACTTGAACAGTACTGCTAAATCTCCATTTTGTGGGGAATTGTTTCCCAATGCTTCCTTTTCGAGGCATGGGAATGATATTAAGTTAGGTTTTATTGATGATGACGAAAAATTTATCAGGTGCAACAAAGTTTGCACCAAATCAAAGGCTTTTAGACCTTCACGTTGCATTGCACGCAAAATAATCAGGAAGCGGTTGACTTCCAAACACTGGAAGGTTGCTCCGAAGTTGAAGGATTATGAACATTCTCGATATGATAAGGGAATTAAATCCTTAAGCCGTAAGAGGAAGACTTATTACAACTTCGAAAGATCTCAGTGTCACACTCTTTTGAAGAGGAAAAAATTGTCAGACAAGGGTTCAATGGTAACTCGTGGTGGAGGATTCATCAGCGAGAGTGTATCTGATTCACCTAAGAAAGTAATTCGTGGAATTAACCGTAGCTCATCTGCAAAAGTTCGTGCTTCTAAGGATTCTCATGTAAAGTTTAGCATCGAGTCATTCAGGATTCCAGAACTTTATGTCGAGGTTCCCGAAACCGCAACTGTTGCTTCATTAAAGaGGACAGTCATGGAGGCAGTGATGAATATAATAGGAGGTGGAGTGCATGTTGGTGTTCTTGTTCAGGGGAAGAAAGTTAGAGATGACAATAGAACTCTTCAGCAGACTGGTATATCTTGTAAAGAAAATATAGATAAACTCGGTTTTGTGTTGGAGCCAAGCTCTTCTCTAGCTTTTCCAGTTGTTTGCGCCGGTAATCCTTCTCTCCATGAAGCGTCCGAGCCTACGAGGCCTCCAGGAACTCCTTCCATAGATTCAGGGATTTCGGTTGCCAAACAGGATTCCTCCTTACTTACAAATACAGGCGGTGACCTTGTTGAAATTAATCATGAATCAGCTTCTTCCCTTGCCGACAGTCTATCTGACGATAAACTAACAAAAGATTCTGGTGCACTAGTTAGTGTTCTGGATAATAGCGTAGAGGCATTAGCTGCTGTTCCCGTGAATCAGAGCACAGGACACTCCGAGCTTGTACAGCGTCGAGCCAGGAGACCGTTTACCGTGTCTGAAGTAGAAGCACTTGTTCATGCAGTTGAGGAAATTGGAACTGGAAGGTGGCGTGATGTAAAGTTGCGATGTTTTGAGAATGCAGACCACAGGACCTATGTAGATTTGAAGGATAAATGGAAAACTTTAGTGCACACTGCAAAAATCTCTCCTCAACAAAGGAGAGGACAGCCAGTCCCTCAGGAGCTATTGGATAGGGTTTTGGCTGCACATGCTTACTGGTCTATCCACCAAGCAAAGCATCATGTTAAGCATCAAACCAATAGTGTTCAACCACTTGTGATTATGTAG 1860 0.4188 MVLKKNRNNGLGGFQVPRCPRSARTRVPFKKPVEDDRSCAFELLASLAGELLKESESSASSNASEVKLLPEERFRNGSCEEKSSENEKHLEIAEADCIIECISANNDVKSEIFKLENKFGNHSDTNRVIEVPNDSEAGRSGFERLSVDDKFSLKDPLKLGVNSPSLVNLNSTAKSPFCGELFPNASFSRHGNDIKLGFIDDDEKFIRCNKVCTKSKAFRPSRCIARKIIRKRLTSKHWKVAPKLKDYEHSRYDKGIKSLSRKRKTYYNFERSQCHTLLKRKKLSDKGSMVTRGGGFISESVSDSPKKVIRGINRSSSAKVRASKDSHVKFSIESFRIPELYVEVPETATVASLKRTVMEAVMNIIGGGVHVGVLVQGKKVRDDNRTLQQTGISCKENIDKLGFVLEPSSSLAFPVVCAGNPSLHEASEPTRPPGTPSIDSGISVAKQDSSLLTNTGGDLVEINHESASSLADSLSDDKLTKDSGALVSVLDNSVEALAAVPVNQSTGHSELVQRRARRPFTVSEVEALVHAVEEIGTGRWRDVKLRCFENADHRTYVDLKDKWKTLVHTAKISPQQRRGQPVPQELLDRVLAAHAYWSIHQAKHHVKHQTNSVQPLVIM 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03217 619 CDD SANT_TRF 518 568 - -
Tsu05g03217 619 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 618 IPR031105 -
Tsu05g03217 619 Gene3D - 506 609 - -
Tsu05g03217 619 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 618 - -
Tsu05g03217 619 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 513 571 IPR017930 -
Tsu05g03217 619 ProSiteProfiles Myb-like domain profile. 512 567 IPR001005 -
Tsu05g03217 619 SMART sant 516 569 IPR001005 -
Tsu05g03217 619 SUPERFAMILY Homeodomain-like 518 598 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03217 Tsu-Chr5 43371908 43376676 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03217 - - mtr:MTR_5g080010 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00585 03 5063601 5068436 Tsu05g03217 05 43371908 43376676 ECH
Tsu04g01151 04 11414006 11420663 Tsu05g03217 05 43371908 43376676 ECH
Tsu02g05206 02 61026932 61032368 Tsu05g03217 05 43371908 43376676 ECH
Tsu05g03217 05 43371908 43376676 Tsu05g03217 05 43371908 43376676 ECH