Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00585 ATGGTGTTGAAGAAAAGGGTAAATAATGGATTCACTGGCTTTCAAGTTCCGGTTATTCCTAAAGCTCCTAGATCTGCAAGAGGAAGGGGTCCATTGAACAAAACGATCGAGGATGGTCAAGTTTGTGCTTTCGAAATATTGGCATCTATAGCTGGGAAGCTGTTGGAGGAAAGTGAAAGTTCTGCTTCTAGCAATGCATCTGAAGGAAATAGCCAAGGTGTCATTGTGCAAGATCAACAAGATGAAGGTAAACCATCGATAATGGAGGGAATTCATCAAGGAAACTGTACAGAGAGTATTTTTACAACTGACGTAGCCTTACAAAACCGTGATCAGAAACCTCTTCTGCACGTGAAGTCCGATTTTTCATcgaaaaaagttgaaaaaactaATGTGAAGACTGAAACGGTTGAATCGTATAATAAGTATGGGAGTTATACTAATAGATTAGTAGAAGCACCTGAAAATTTCAGGGAGTCTTGTAACAGGAAAATTAAGAAAGGATTCAGATATGATAAATGTGGTTTGAAAGATCGGCTAGAATTGTATATGTCTCCTTCTCTGGCCGACTCAAAAGTTAATGTAAAATATCCACTTCATAGGAAGCCTTTTCCCACCGATTCCTTTACCAAGTGTGGGAATGGCATTAAGATAGATTTTAGAGATGATGACGAAAACTTTTTAAGGTGCACAAAGGTTTGCACTAAGTCGAAGGCTTTTAGGTCTCCACGACGCATGGCACACCGCAGAATCAAGAATCTGCTGTCTTCTAAATACTGGAATGTTGCTCCAAAGTTGAAGGACTGTGAACTTTCTAGATCTGATCTAGAAGTACCTCTTTACCGTAAGAGGAAGACTTGTAACAATTCCGACAGATCTCGCCACAGCACCATTGTTAAGAGGAGGAAATTCTTTGACCGGGTTTCTGGAGTAACTTCTGATGGAGGATTTAGCAGTGAGAGTGTGTCAAATTCGCCCGAGAAAGGAACGGATGGACACAAGCCTAGCTCCTCTTCGAAACTGCAAGTAACCGAGGATTCTCATGTGAAGTTTCGCATCAAGTCGTTTAAGATACCAGAGCTTTACATTGAGGTTCCCGAAACTGCAACTGTTGGTTCACTAAAGAGGACAGTCATGGAGGCAGTTATGGCTATAATTGGAGGCGGTATGAATGTTGGTGTTCTTCTTCAGGGCGAAGAAATTGGAGATGACAATAGAACACTTGAGCAGACTGGTTTATCTTGTAATGAGAATCTGGATGCCCTCAGTTTCATGTTGGAGCCTAGTTCTCTACTAGCTTCTCCTGTTTCTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCGAACCTATCAGGTCTCCGGAAACTCCTGCATTAGATTCAGGGATATCTGATCCCGTGCGTGACTTCAATTTGCCGACAAATCAAGACACTCTAGTTGAAAATAACCATGACTCTACTTGTTCTCCCACTGACACCATAGTTGACAAAATAACACCAGATCATTCCAATGCGATCGTTGCTCTTCCAGCTAGTCCCGAAGCATTAGCTGTGGTCCCTGTGAGTCAGAAAGTCAAGCGTTCTGAGTTTATACATCGTCGAACCAGGAGACCATTCTCTGTGACTGAGGTAGAAGCACTTGTTCATGCAGTTGAAGAACTTGGGACTGGAAGGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCGGATCACAGAACTTATGTAGATTTAAAgGATAAATGGAAAACACTAGTGCACACTGCAAAAATCTCTCCTCAACAAAGAAGAGGAGAACCTGTACCTCAGGAGTTATTGGACAGAGTTTTAGGAGCACATGCTTATTGGTCTCAGCACCAAATCAAGCAACATGGAAAGCATCAAGGTGGAACAGGAGCAACATTGAAGATTACAGAAACCTCAGCTGAAAGGGTGTCCATTCATGTGTAG 1953 0.4178 MVLKKRVNNGFTGFQVPVIPKAPRSARGRGPLNKTIEDGQVCAFEILASIAGKLLEESESSASSNASEGNSQGVIVQDQQDEGKPSIMEGIHQGNCTESIFTTDVALQNRDQKPLLHVKSDFSSKKVEKTNVKTETVESYNKYGSYTNRLVEAPENFRESCNRKIKKGFRYDKCGLKDRLELYMSPSLADSKVNVKYPLHRKPFPTDSFTKCGNGIKIDFRDDDENFLRCTKVCTKSKAFRSPRRMAHRRIKNLLSSKYWNVAPKLKDCELSRSDLEVPLYRKRKTCNNSDRSRHSTIVKRRKFFDRVSGVTSDGGFSSESVSNSPEKGTDGHKPSSSSKLQVTEDSHVKFRIKSFKIPELYIEVPETATVGSLKRTVMEAVMAIIGGGMNVGVLLQGEEIGDDNRTLEQTGLSCNENLDALSFMLEPSSLLASPVSCVGDPSSQCETSEPIRSPETPALDSGISDPVRDFNLPTNQDTLVENNHDSTCSPTDTIVDKITPDHSNAIVALPASPEALAVVPVSQKVKRSEFIHRRTRRPFSVTEVEALVHAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLDRVLGAHAYWSQHQIKQHGKHQGGTGATLKITETSAERVSIHV 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00585 650 MobiDBLite consensus disorder prediction 59 82 - -
Tsu03g00585 650 SUPERFAMILY Homeodomain-like 538 619 IPR009057 -
Tsu03g00585 650 MobiDBLite consensus disorder prediction 59 79 - -
Tsu03g00585 650 CDD SANT_TRF 538 588 - -
Tsu03g00585 650 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 532 591 IPR017930 -
Tsu03g00585 650 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 638 IPR031105 -
Tsu03g00585 650 MobiDBLite consensus disorder prediction 442 465 - -
Tsu03g00585 650 Gene3D - 525 629 - -
Tsu03g00585 650 PANTHER TELOMERE-BINDING PROTEIN, PUTATIVE-RELATED 1 638 - -
Tsu03g00585 650 SMART sant 536 589 IPR001005 -
Tsu03g00585 650 MobiDBLite consensus disorder prediction 312 343 - -
Tsu03g00585 650 ProSiteProfiles Myb-like domain profile. 532 587 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00585 Tsu-Chr3 5063601 5068436 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00585 - - gmx:100795471 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00585 03 5063601 5068436 Tsu05g03217 05 43371908 43376676 ECH
Tsu04g01151 04 11414006 11420663 Tsu03g00585 03 5063601 5068436 ECH
Tsu02g05206 02 61026932 61032368 Tsu03g00585 03 5063601 5068436 ECH
Tsu03g00585 03 5063601 5068436 Tsu03g00585 03 5063601 5068436 ECH