Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00990 ATGTCTTCTGCTGGTGTATCCACTCTTAGTCCTGTTTCAAGGGAGACATTGTTGTCTCCAACAAATGGATTTTGTAATCCACTGCACTTGTCTGCGAATCATCATGAGTTCATTTTCGTGTATCTTTCGTATTCGGGGTCTTTGTCTCCGATGCGTGTTCTACCTTCGGATACGATTGAGTCTGTGAAACTCAAGATTCAAAGGAATGAAGGGGTGACAAACAAACAGAAGTTGGTTTGTAATGGCCGCGAGTTATCACGTAGCAATTCTTTGCTCAAGGATTATGGGGTTACCGAAGGAAATGTATTGCATTTGGTTATTCGACTGACTGATCTCCAGACTATCAGTGTGAGAACTTCTTGTGGCAAGGAGTTTACCTTTCAGGTTGAAAGGTGCAGGGATGTTGGGTATGTTAAGCAACAGATTGCGAAAAAGGAAAAAGAGTTGTCTGATCCTGAACAACAGGAGGTTGTGTGTAACGGGGAGCTGCTTGATGATCAGAAGCTTATTGATGATATCTGTAGCAAATATAATGATGCAGTGATACATCTTTTTGTTAGAACAAAATATGCGGATGTTAGCACAGGACTCGAAGAGTTGTCTATTGCAGCAAAAGAATTGAATGGTACAAACAACTGTGATGCTAATGATAGTGACTATGAGAGGAAATATGATGTTGGTAAAGAAGATGCGAGAAGGGAGTATGAAGCCATCGAGCAAATTATGTCAAGAAAAGTTCTTGACAGAGGTCTTCTTTTGGAGCCGGTTATTGTTAACCCTAAGGTTGAATTAGCTTCAGAGGTTTGGGATATGATAGACACTACATATGACGGGCTAGAAAATGGAAATTCTCCAATCAGGTCGTCAGAGGGTACAGGAGGGGCTTATTTTATGCTAGACTCAACAGGGCAAAAGTATGTATCGGTTTTTAAACCTATTGATGAAGAGCCAATGGCTGTGAACAACCCTAGAGGTTTACCTTTGTCGTTAGATGGTGAGGGCTTAAAAAAGGGTACAAGAGTTGGCCAAGGAGCTTTCAGGGAAGTTGCTGCTTACATTCTGGACCATCCAATGAGTGGCCGCCGGTCATTATTTGGTGATGATAAAGGCTTTGCTGGTGTTCCCCCAACTGTTATGGCAAAGTGCTTGCATGAAGGATTTAACCATCCAGAGGGTTTGACTGCCAAGTTTGGTTCCTTGCAAATGTTCATGGAGAATAATGGAAGTTGTGAGGATATGGGACCTGGTGCTTTCCCGGTGAAGGAAGTGCACAAAATCACCGTGCTGGACATGAGACTTGCAAATGCAGATAGGCATGCTGGGAATATTTTGCTTGGCAGAGAGAAGGAAAACGGCCAAACTGTTTTGATTCCAATTGATCATGGATACTGCCTCCCCACTAGTTTTGAAGATTGTACCTTCGAATGGCTTTATTGGCCACAAGCTCGCCAGCCATACTCTCCAGAGATCATTGACTACATAAAGTCCCTTGACGCCGAAGAAGATATTGCCCTTCTGAAGTTTCACGGATGGGATCTGCCACTCGAATGCGCTCGCACTCTCCGAATCTCGACCATGCTTCTGAAAAAAGGAGTGGAAAAAGGGATGACTCCTTTTGCCATTGGAAGCCTAATGTGCCGAGAAACATTGAACAAGGAATCTTTGATCGAAGGAATCGTTAAAGCAGCACTTGATTCTGTTCTTCCTTGTACCAGTGAAGCTACTTTTATGGATGCTGTTTCTGAGATTATGGACCAGCACCTTGATGAGATCACCAGCAGCAATTATAATTCTTAA 1797 0.4296 MSSAGVSTLSPVSRETLLSPTNGFCNPLHLSANHHEFIFVYLSYSGSLSPMRVLPSDTIESVKLKIQRNEGVTNKQKLVCNGRELSRSNSLLKDYGVTEGNVLHLVIRLTDLQTISVRTSCGKEFTFQVERCRDVGYVKQQIAKKEKELSDPEQQEVVCNGELLDDQKLIDDICSKYNDAVIHLFVRTKYADVSTGLEELSIAAKELNGTNNCDANDSDYERKYDVGKEDARREYEAIEQIMSRKVLDRGLLLEPVIVNPKVELASEVWDMIDTTYDGLENGNSPIRSSEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYILDHPMSGRRSLFGDDKGFAGVPPTVMAKCLHEGFNHPEGLTAKFGSLQMFMENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILLGREKENGQTVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIKSLDAEEDIALLKFHGWDLPLECARTLRISTMLLKKGVEKGMTPFAIGSLMCRETLNKESLIEGIVKAALDSVLPCTSEATFMDAVSEIMDQHLDEITSSNYNS 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00990 598 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 282 575 IPR000403 -
Trre15g00990 598 SUPERFAMILY Protein kinase-like (PK-like) 429 597 IPR011009 -
Trre15g00990 598 Gene3D - 35 113 - -
Trre15g00990 598 Pfam Phosphatidylinositol 3- and 4-kinase 291 540 IPR000403 -
Trre15g00990 598 Gene3D - 114 190 - -
Trre15g00990 598 ProSiteProfiles Ubiquitin domain profile. 113 172 IPR000626 GO:0005515
Trre15g00990 598 SUPERFAMILY Ubiquitin-like 31 110 IPR029071 -
Trre15g00990 598 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 48 566 IPR044571 -
Trre15g00990 598 ProSiteProfiles Ubiquitin domain profile. 38 108 IPR000626 GO:0005515
Trre15g00990 598 Pfam Ubiquitin family 44 109 IPR000626 GO:0005515
Trre15g00990 598 Pfam Ubiquitin family 115 188 IPR000626 GO:0005515
Trre15g00990 598 CDD Ubl_ubiquitin_like 115 185 - -
Trre15g00990 598 PRINTS Ubiquitin signature 89 110 IPR019956 -
Trre15g00990 598 PRINTS Ubiquitin signature 47 67 IPR019956 -
Trre15g00990 598 SMART ubq_7 38 108 IPR000626 GO:0005515
Trre15g00990 598 SMART ubq_7 113 187 IPR000626 GO:0005515
Trre15g00990 598 SUPERFAMILY Ubiquitin-like 111 188 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00990 Trre-Chr15 7744425 7747101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00990 1 590 Acyl Lipid Metabolism Gene Families AT5G24240 55.092 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00990 - - gmx:100815111 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00990 15 7744425 7747101 Trre5g03856 5 39437201 39439682 ECH
Trre15g00990 15 7744425 7747101 Trre15g00990 15 7744425 7747101 ECH
Trre9g00282 9 2005477 2007575 Trre15g00990 15 7744425 7747101 ECH
Trre13g05367 13 58471027 58473150 Trre15g00990 15 7744425 7747101 PCT