Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03856 ATGGCTTGTTTGACACTTGGTCCGATGCATGAACACGGTGAATTTACCAGTTGTTTTAGTCCTCATATGAGGGACTCTATTTTGATTTACCTAACTGTCGGTGGATCTGTGATCCCCATGCATATTATGGAGACGGATTCTATTGCTTCGGTGAAGCTGAGAATTCAAACCTTCAAAGGATTTTTTGTACAGAAACGGAAACTGGTTTTTGAAGGGAATGAACTGGCTCATAACAAATCTTGTTTCCGAGATTACGGTGTTGCTGATGGAAATGTGTTGCACCTAATGCTAAGGCTTTCTGATCTTAAAGCTATTACTGTTAGGACTTTATGTGGTCACGAATTTGGGTTTTATGTCGAGAAGACTAGGAATGTGGGTTATGTGAAGCAGCAGATTGCATGGAAAGGGCAAGGGATCTTTGATCTTGAAGATCAAGAATTGGTATGGGAGGGTGAGGTGCTTGAAGATCAGAGACTTATTGAGGACATCGGTAAGGACAATGATGTTGTGATTCATTTGTTGGTCAGGATATCAGATACCAAGGTAAGAACTAAACCAGTTGAGAAGGATTTGGAATTATCAATTGAGGCATCATTCACACATGATATGGTGCCAAATTTAGCTGCAGACCAGTTAAGGCCAGTGAAAAGGAGCCTTTTGACTAGAGAATTTCTTTTGGAACCAATTTTTAAGAATTACAATATCAAAATTCCACCAGTGATCCAGGAACTAATTAAGGTTACATTAGAGGGGTTAGAGAAAGGCCGCAAACCAATTCGATCTTCAGAGGGATCAGGAGGAGCTTATCTCATGCAAGATTCTTCTGGCTTAAAGTATGTTTCAGTTTTCAAGCCTACTGATGAGGAGCCTATGGCAATTAATAATCCTCGGGGGTTACCTATCTCTGTCGACGGTGAAGGGTTAAAGAAAGGCACTCGAGTAGGGCAAGGTGCGTTGAGAGAAGTTGCAGCTTACATTTTAGACCATCCTAGGAAAGGACGCCGAACAAATAATAACAATGAGGAGCAGGGATTTGCTGGAGTTCCGCCTACTGTTATGGTCAAATGCATGAGTGAAGCGTTCCATCATCCTGAGGGTTATAAGAATGTTTCAAGTGATGTTAAAATAGGATCGCTTCAGATGTTTATGAGGAACATTGGAAGCTGTGAAGACATGGGCCCTAGTGCATTTCCGGTGGAAGAGGTACACAAGATCTCTGTTCTGGATATGAGGTTGGTAAACGCAGATAGACATGCTGGGAACATTTTGGTTGCCAAGGATGGCGAAGGTGGTCCAACTCTCCTTATTCCAATTGACCATGGCTATTGTCTACCAAAGAGCTTTGAAGACTGCACTTTTGACTGGTTATACTGGCCACAAGCTAAAGAACCTTACTCCCCAGATACCATTGAGTACATAAAATCGCTAAATGCAGAGGAAGATATTAATCTTTTGAAGTCTCATGGATGGGAACTTCCTCCTGAATGTGCCCGCATCTTACGTATATCAACAATGCTTCTTCAGAAAGGTGCAGAGAAAGGGCTCACTCCTTTCACCATTGGAAGCATCATGTGTAGAGAAACGTTAAACAAAAATTCTGCCATTGAGCAGATTGTTCAGAAAGCGGAGGAAGCTGCACTTCCTGGAACAAGCGAAGCTGCATTCCTTGATCTTGTTTCAGCGATCATGGATAATCATTTAGAAGAGTTATTCACATGA 1719 0.4188 MACLTLGPMHEHGEFTSCFSPHMRDSILIYLTVGGSVIPMHIMETDSIASVKLRIQTFKGFFVQKRKLVFEGNELAHNKSCFRDYGVADGNVLHLMLRLSDLKAITVRTLCGHEFGFYVEKTRNVGYVKQQIAWKGQGIFDLEDQELVWEGEVLEDQRLIEDIGKDNDVVIHLLVRISDTKVRTKPVEKDLELSIEASFTHDMVPNLAADQLRPVKRSLLTREFLLEPIFKNYNIKIPPVIQELIKVTLEGLEKGRKPIRSSEGSGGAYLMQDSSGLKYVSVFKPTDEEPMAINNPRGLPISVDGEGLKKGTRVGQGALREVAAYILDHPRKGRRTNNNNEEQGFAGVPPTVMVKCMSEAFHHPEGYKNVSSDVKIGSLQMFMRNIGSCEDMGPSAFPVEEVHKISVLDMRLVNADRHAGNILVAKDGEGGPTLLIPIDHGYCLPKSFEDCTFDWLYWPQAKEPYSPDTIEYIKSLNAEEDINLLKSHGWELPPECARILRISTMLLQKGAEKGLTPFTIGSIMCRETLNKNSAIEQIVQKAEEAALPGTSEAAFLDLVSAIMDNHLEELFT 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03856 572 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 36 545 IPR044571 -
Trre5g03856 572 SMART ubq_7 103 176 IPR000626 GO:0005515
Trre5g03856 572 SMART ubq_7 27 98 IPR000626 GO:0005515
Trre5g03856 572 Pfam Ubiquitin family 105 176 IPR000626 GO:0005515
Trre5g03856 572 Pfam Ubiquitin family 33 99 IPR000626 GO:0005515
Trre5g03856 572 SUPERFAMILY Ubiquitin-like 74 177 IPR029071 -
Trre5g03856 572 Coils Coil 525 545 - -
Trre5g03856 572 SUPERFAMILY Protein kinase-like (PK-like) 406 572 IPR011009 -
Trre5g03856 572 Gene3D - 104 192 - -
Trre5g03856 572 Gene3D - 20 102 - -
Trre5g03856 572 Pfam Phosphatidylinositol 3- and 4-kinase 264 520 IPR000403 -
Trre5g03856 572 CDD Ubl_ubiquitin_like 105 174 - -
Trre5g03856 572 ProSiteProfiles Ubiquitin domain profile. 103 180 IPR000626 GO:0005515
Trre5g03856 572 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 255 554 IPR000403 -
Trre5g03856 572 ProSiteProfiles Ubiquitin domain profile. 25 98 IPR000626 GO:0005515
Trre5g03856 572 SUPERFAMILY Ubiquitin-like 24 100 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03856 Trre-Chr5 39437201 39439682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03856 19 569 Acyl Lipid Metabolism Gene Families AT5G24240 61.413 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03856 - - gmx:100812724 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00990 15 7744425 7747101 Trre5g03856 5 39437201 39439682 ECH
Trre5g03856 5 39437201 39439682 Trre5g03856 5 39437201 39439682 ECH