Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05367 ATGTCATCTGCTGGTGTTACTATTCTTAGTCCAGTGGATCCCACTGAACCATTGTTGCCTCCAAATGCATCCCATTTTCCATCTCACTTGCCCTTTGAGGACAAATCCATTTTCATATTTCTCTCGTTTTCGGGTTCGTTGACTCCTATCCGTGTTATGGAATGGGATACTATTGAGTCTGTCAAATTCAAAATCCAAAGGTCTGAGTGTCTTCCGTTTTTAACTAACAAGCAGAAGTTGGTTTATGCTGGTCGTGAACTTGCCCGAAGTGATTCTTTACTCAAGGACTATGGAGTAACCGATGGAAATGTTTTGCATTTGATAATCAAACTATCAGATCTTCAGCTTATCAATGTGAAAACATCTTCTGGAAAGGAATTCTCTTTTCAGGTTGAACGAGGTAGGGATGTCAAGTACATAAAGCGACGTATTTCTAAAAAGGAGAAACAATTTGATGATCCTGAGGAGCAGGAACTTGTGTGTAATGGGGAACGGCTGGAGGATCAGAAGCTTATTGATGACATCTGCTGCAAGCATAATGATGCAGTGGTGCATATGTTTGTTAGAAAAAAGCATGCAAAAGTTCATAGAAGACCCCTTGAGTTGTCAATTGTAGCAACAGACTTGGCTGATAAGAAGACTGAAGATGTTTGTGGTAGAAAACTTGAAGTTGGCGGTGAAGAAGATACTGATGCCATTCAGAGAGTGGTGCCGAGAAAGCTTCCTGATAGTGTTTTTATTTTGGAGCCAATTATAATTAACCCTAAAATTGAGTTAGCTTCTGTGATTCAGAATATGGTAAACTCTACATACGATGGACTAGCTAATGAAAAATATCCCGTAGGTTCTGCAGAAGGTACAGGGGGAGCTTACTTTATGCCTGATTCAACTGGTCAGACGTACGTGTCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTGTGAATAACCCTCGAGGTCTTCCATTATCACTAAATGGTGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGTGCATTCAGGGAAGTTGCGGCTTATGTTTTGGATCATCCAATAAGTGGACGCTGCAAATTATTTGGTGATGTGAAGGGTTTTGCTGGTGTTCCTCCAACATTGATGGTCAAGTGCTTGCATAAAGGATTTAACCATCCAGGAGATTTGATTGCTAAGATTGGATCCATGCAGATGTTTGTGAAAAATAACGGGAGCTGTGAAGATATTGGTCCTGGGGCTTTCCCGGTAAAGGAAGTGCACAAAATTACTGTACTGGACATAAGATTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCACAGAGGAGGAGGATGACCAATCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACTAGTTTTGAAGATTGTACCTTTGAATGGCTTTACTGGCCGCAAGCCCGCAAGCCATATTCCGCGGAAACGATTGAGTACATAAAGTCGCTGGATGCTGAAGAAGATATTGCCCTTTTAAAGTTTCATGGTTGGGATCTGCCAATTGAATGTGCCCGGACTCTTAGAATCTCAACCATGCTTTTGAAGAAAGGGGTTGAGAGAGGATTGACCCCTTTTGCAATTGGAAACTTGATGTGCAGGGAATCATTGAACAAGGAATCTGTGATAGAGGAAATTGTTGAAGAAGCATTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGATGGATGCTGTTTCTCAAATCATGGACCAGCGTCTTGATAAGATTTTCAACTCTCCTTTTTAA 1776 0.4133 MSSAGVTILSPVDPTEPLLPPNASHFPSHLPFEDKSIFIFLSFSGSLTPIRVMEWDTIESVKFKIQRSECLPFLTNKQKLVYAGRELARSDSLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRISKKEKQFDDPEEQELVCNGERLEDQKLIDDICCKHNDAVVHMFVRKKHAKVHRRPLELSIVATDLADKKTEDVCGRKLEVGGEEDTDAIQRVVPRKLPDSVFILEPIIINPKIELASVIQNMVNSTYDGLANEKYPVGSAEGTGGAYFMPDSTGQTYVSVFKPIDEEPMAVNNPRGLPLSLNGEGLKKGTRVGQGAFREVAAYVLDHPISGRCKLFGDVKGFAGVPPTLMVKCLHKGFNHPGDLIAKIGSMQMFVKNNGSCEDIGPGAFPVKEVHKITVLDIRLANADRHAGNILISTEEEDDQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARKPYSAETIEYIKSLDAEEDIALLKFHGWDLPIECARTLRISTMLLKKGVERGLTPFAIGNLMCRESLNKESVIEEIVEEALDSVLPGTSEATLMDAVSQIMDQRLDKIFNSPF 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05367 591 CDD Ubl_ubiquitin_like 117 187 - -
Trre13g05367 591 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 277 570 IPR000403 -
Trre13g05367 591 SUPERFAMILY Ubiquitin-like 110 192 IPR029071 -
Trre13g05367 591 Gene3D - 116 201 - -
Trre13g05367 591 Gene3D - 37 110 - -
Trre13g05367 591 SUPERFAMILY Protein kinase-like (PK-like) 423 587 IPR011009 -
Trre13g05367 591 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 47 561 IPR044571 -
Trre13g05367 591 Pfam Ubiquitin family 39 111 IPR000626 GO:0005515
Trre13g05367 591 Pfam Ubiquitin family 117 190 IPR000626 GO:0005515
Trre13g05367 591 ProSiteProfiles Ubiquitin domain profile. 56 110 IPR000626 GO:0005515
Trre13g05367 591 SUPERFAMILY Ubiquitin-like 26 111 IPR029071 -
Trre13g05367 591 Pfam Phosphatidylinositol 3- and 4-kinase 286 535 IPR000403 -
Trre13g05367 591 SMART ubq_7 115 189 IPR000626 GO:0005515
Trre13g05367 591 SMART ubq_7 37 110 IPR000626 GO:0005515
Trre13g05367 591 ProSiteProfiles Ubiquitin domain profile. 117 174 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05367 Trre-Chr13 58471027 58473150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05367 34 585 Acyl Lipid Metabolism Gene Families AT5G24240 55.296 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05367 - - gmx:100791631 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05367 13 58471027 58473150 Trre15g00990 15 7744425 7747101 PCT