Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00282 ATGTCGGTTGCTGATGTTGCTATGAGGCCGATTTTAAAAGAATCGGCGTCGAGTCGTCGTCATCACCGCCGTCGTTCCTCCAGCGAATCGATCCTGATTTATTTAACCGTCGACGGAGCAGTTACACCAATGCGTGTATTAGAATCAGATTCAATTGCTTCTGTTAAAATGCGAATTCAAACACGAAAAGGTGTTTCATGGAAGAAGCAAAATCTAGTTTCAAATGGAAGAGAATTATCTCGTAATAATAATCTTGTAAAAGATTATGGTGTAACTTCTGGTAATGTTGTTCATTTGGTTCTTCGTCTTTCTGATATGATTTTTATCGTTGTTAGAACGATATGTGGTAAGGAATTTGAGATTCAGATTGATCGGAAGAGAAATGTTGCACATCTTAAACAGTGTATTAAGAGAAAGGGGAAAGGTTTTATTGATCTTGTTGAGGAAGAACAAGAGTTTTTCTGCTATGGTGAAAAGCTTGATGATAGAAGAATTTTTGATGATATTTGTAAGAATGATCATGATGTTATTCATCTCATTGTTAAAAAATCAGCAAAAGTTAATGCTACAATTGTTCATAATAAAGATTTAGAGCTTTCTGTTGTTGCAGAGAATCACAATTTGAATAATCATAATCATAATCATAATAATAATCAGAATCAGAATGAGGTTGTTAAGGTTATAGAACAAAAACAACCCTCTGATTTTGATTTTTTGTTAGAGCCAATTTTTGTGAACCATAGGATCAATTTTTTTCCTTTCCTATGGGATATGATAGATTCAACTTTCAATGGTTTGAAGAAAGGAAATAAACCTTTGAGATCTTCTGAAGGAACAGGTGGGACTTACTTCATGCAAGATTCAAAAGGTGTAGAGTATCTTTCGGTTTTTAAGCCGATTGATGAGGAACCAATGGCAATTAATAATCCACGTGGTTTGCCGGTTTCGTCGAACGGTGAGGGTTTAAAGATAGGGACAAAGGTTGGAGAAGGAGCTGTGAGAGAAGTTGCAGCCTATATATTGGATCATCCGAAGAACGGACCGCGTTTGGTGTCCGGTGAAGCAGTTGGTTTTGCTGGTGTTCCACCTACGGTTATGGTTCGGTGTTTACACGAAGCGTTTAATTACCCTAATGGATCTTCGATGATGGATCACAAGGTGGGGTCTTTGCAGAAGTTTATGAGTAATGATGGTAATTGTGAGGATATTGGTCCTGGAGCTTTTCCTGTCGAAGAGGTGCATAAGATCAGTGTGCTTGATATAAGAATGGCGAATGCAGATAGGCATGCTGGGAATATATTGTTTAGAAAAGAACCAAATGGCGAAACTCTCCTCATTCCCATTGATCATGGCTACTGTCTTCCTGAGAGTTTTGAAGATTGCACATTTGATTGGCTTTATTGGCCTCAGGCGCGTCAGCCATACTCTCTCGATACAGTTGATTATATAAACTCTCTGGATGCTGAAAAAGACATAGAGCTTCTGAGACATTATGGTTGGGATGTTCCAGTTGAGTGTGCCAGAACACTCCGCATCTCCACAATGTTATTGAAGAAAGGGGTTGAGAGAGGACTCACTCCCTATGCCATTGGAAGCATCATGTGTAGAGAAAATTTGAACAAGAAATCAGTAATTGAGGAGATTGTCTGTGAAGCCCAGGAATCATTTTTACCTGGCATGGATGAATCTGTTTTTCTCGAATTTGTATCGCAGATCATGGATTCTCGCCTTGGTGAGGTTTCGAAATAG 1749 0.3865 MSVADVAMRPILKESASSRRHHRRRSSSESILIYLTVDGAVTPMRVLESDSIASVKMRIQTRKGVSWKKQNLVSNGRELSRNNNLVKDYGVTSGNVVHLVLRLSDMIFIVVRTICGKEFEIQIDRKRNVAHLKQCIKRKGKGFIDLVEEEQEFFCYGEKLDDRRIFDDICKNDHDVIHLIVKKSAKVNATIVHNKDLELSVVAENHNLNNHNHNHNNNQNQNEVVKVIEQKQPSDFDFLLEPIFVNHRINFFPFLWDMIDSTFNGLKKGNKPLRSSEGTGGTYFMQDSKGVEYLSVFKPIDEEPMAINNPRGLPVSSNGEGLKIGTKVGEGAVREVAAYILDHPKNGPRLVSGEAVGFAGVPPTVMVRCLHEAFNYPNGSSMMDHKVGSLQKFMSNDGNCEDIGPGAFPVEEVHKISVLDIRMANADRHAGNILFRKEPNGETLLIPIDHGYCLPESFEDCTFDWLYWPQARQPYSLDTVDYINSLDAEKDIELLRHYGWDVPVECARTLRISTMLLKKGVERGLTPYAIGSIMCRENLNKKSVIEEIVCEAQESFLPGMDESVFLEFVSQIMDSRLGEVSK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00282 582 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 40 555 IPR044571 -
Trre9g00282 582 SUPERFAMILY Ubiquitin-like 32 104 IPR029071 -
Trre9g00282 582 Pfam Ubiquitin family 37 103 IPR000626 GO:0005515
Trre9g00282 582 Gene3D - 108 216 - -
Trre9g00282 582 SUPERFAMILY Ubiquitin-like 103 183 IPR029071 -
Trre9g00282 582 Gene3D - 14 106 - -
Trre9g00282 582 Pfam Phosphatidylinositol 3- and 4-kinase 278 529 IPR000403 -
Trre9g00282 582 SUPERFAMILY Protein kinase-like (PK-like) 418 579 IPR011009 -
Trre9g00282 582 ProSiteProfiles Ubiquitin domain profile. 107 186 IPR000626 GO:0005515
Trre9g00282 582 ProSiteProfiles Ubiquitin domain profile. 33 106 IPR000626 GO:0005515
Trre9g00282 582 SMART ubq_7 31 102 IPR000626 GO:0005515
Trre9g00282 582 SMART ubq_7 107 182 IPR000626 GO:0005515
Trre9g00282 582 CDD Ubl_ubiquitin_like 109 180 - -
Trre9g00282 582 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 269 564 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00282 Trre-Chr9 2005477 2007575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g00282 1 581 Acyl Lipid Metabolism Gene Families AT5G24240 53.925 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00282 - - gmx:100787492 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00282 9 2005477 2007575 Trre9g00282 9 2005477 2007575 ECH
Trre9g00282 9 2005477 2007575 Trre15g00990 15 7744425 7747101 ECH
Trre9g00282 9 2005477 2007575 Trre7g05570 7 61287802 61288555 PCT