Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0068 ATGTCATCTGCTGGTGTTACTACTCTTAGTCCAGTGGATCCCACTGAGCCATTGTTGTCTCCAAATGCATCCCATTTTCCATCTCATTTGCCTTTTGAGGACCAATCCATTTTCATATTTCTTTCGTTTTCGGGTTCGTTGACTCCTATCCGTGTTATGGAATGGGATACTATTGAGTCTGTCAAATTCAAAATCCAAAGGTCTGAGAGTCTTCCGTTTTTAACTAACAAGCAGAAATTGGTTTATGCTGGTCGTGAACTTGCCCGAAGTGATTCTTTACTCAAGGACTATGGAGTAACAGATGGAAATGTTTTGCATTTGATAATCAAACTATCAGATCTTCAGGTTATCAATGTGAAAACATCTTCCGGAAAGGAATTCTCTTTTCAGGTTGAACGAGGTAGGGATGTCAAGTACATAAAGCGACGGATTTCTAAAAAGGAGAAACAGTTTGATGATCCTGAGGAGCAGGAACTTGTGTGTAATGGGGAACGGTTGGAGGATCAGAAGCTTATTGATGATATCTGTTGCAAGCATAATGATGCAGTGGTGCACATGTTTGTTAGAAAAAAGCATGCAAAAGTTCATAGAAGGCCCCTTGAGCTGTCAATTGTAGCAACAGACTTGTCTGATAAGACTAAAGATGTTTGTGGTAGAAAACTTGAAGTTGGCGATGAAGAAGATACTGATGCCACTCAGAGAGTGGTGCCGAGAAAGCTTCCTGATAGTGATTTTCTTTTGGAGCCGATTATAATTAACCCTAAAATTGAGTTAGCTCCAGTGATTCAGAATATGGTAAACTCTACATACGATGGACTAGCTGGTGAGAAATATCCCATAGGTTCGGCAGAAGGTACAGGGGGAGCTTACTTTATGCCTGATTCAACTGGTCAGAAGTATGTGTCTGTTTTTAAGCCTATTGATGAAGAACCAATGGCTGTGAATAACCCTCGAGGTCTTCCATTATCACTAAACGGTGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGCGCATTCAGGGAAGTTGCGGCTTATGTTTTGGATCATCCAATAAGTGGACGCCGCAAATTATTTGGTGATGTGAAGGGTTTTGCTGGTGTTCCTCCAACATTGATGGTCAAGTGCTTGCATAAGGGATTTAACCATCCAGGAGATTTGATTGCTAAGATTGGATCCATGCAGATGTTTGTGAAAAATAGTGGGAGCTGTGAAGATATTGGTCCTGGGGCTTTCCCGGTAAAGGAAGTACACAAAATTAGTGTACTGGACATAAGACTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCACAGAGAAGGACGGTGACCAATCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGTACCTTTGAATGGCTTTACTGGCCGCAAGCCCGGAAGCCATATTCCACGGAAACTATTGAGTACATAAAGTCACTGGATGCTGAAGAAGATATTTCCCTTTTGAAGTTTCATGGATGGGATCTGCCAATTGAATGTGCCCGTACTCTTAGAATCTCAACCATGCTTTTGAAGAAAGGGGTTGAGAGGGGATTGACCCCTTTTGCAATTGGAAACATGATGTGCAGGGAATCATTGAACAAGGAATCTGTGATAGAGGAAATAGTTGAAGAAGCGTTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGATGGATGCTGTTTCTCAAATCATGGACCAGCGTCTTGATAAGATTTTCAACTCTCCTTTTTAA 1773 0.4151 MSSAGVTTLSPVDPTEPLLSPNASHFPSHLPFEDQSIFIFLSFSGSLTPIRVMEWDTIESVKFKIQRSESLPFLTNKQKLVYAGRELARSDSLLKDYGVTDGNVLHLIIKLSDLQVINVKTSSGKEFSFQVERGRDVKYIKRRISKKEKQFDDPEEQELVCNGERLEDQKLIDDICCKHNDAVVHMFVRKKHAKVHRRPLELSIVATDLSDKTKDVCGRKLEVGDEEDTDATQRVVPRKLPDSDFLLEPIIINPKIELAPVIQNMVNSTYDGLAGEKYPIGSAEGTGGAYFMPDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLNGEGLKKGTRVGQGAFREVAAYVLDHPISGRRKLFGDVKGFAGVPPTLMVKCLHKGFNHPGDLIAKIGSMQMFVKNSGSCEDIGPGAFPVKEVHKISVLDIRLANADRHAGNILISTEKDGDQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARKPYSTETIEYIKSLDAEEDISLLKFHGWDLPIECARTLRISTMLLKKGVERGLTPFAIGNMMCRESLNKESVIEEIVEEALDSVLPGTSEATLMDAVSQIMDQRLDKIFNSPF* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0068 590 Pfam Phosphatidylinositol 3- and 4-kinase 285 534 IPR000403 -
Tpr6g0068 590 Gene3D - 37 110 - -
Tpr6g0068 590 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 276 569 IPR000403 -
Tpr6g0068 590 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 586 IPR044571 -
Tpr6g0068 590 SUPERFAMILY Ubiquitin-like 110 192 IPR029071 -
Tpr6g0068 590 CDD Ubl_ubiquitin_like 117 187 - -
Tpr6g0068 590 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 586 - -
Tpr6g0068 590 Pfam Ubiquitin family 117 190 IPR000626 GO:0005515
Tpr6g0068 590 Pfam Ubiquitin family 39 111 IPR000626 GO:0005515
Tpr6g0068 590 Gene3D - 116 201 - -
Tpr6g0068 590 SUPERFAMILY Ubiquitin-like 27 111 IPR029071 -
Tpr6g0068 590 ProSiteProfiles Ubiquitin domain profile. 56 110 IPR000626 GO:0005515
Tpr6g0068 590 SUPERFAMILY Protein kinase-like (PK-like) 420 586 IPR011009 -
Tpr6g0068 590 SMART ubq_7 37 110 IPR000626 GO:0005515
Tpr6g0068 590 SMART ubq_7 115 189 IPR000626 GO:0005515
Tpr6g0068 590 ProSiteProfiles Ubiquitin domain profile. 117 174 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0068 Tpr-Chr6 583366 586631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0068 34 584 Acyl Lipid Metabolism Gene Families AT5G24240 55.376 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0068 - - gmx:100791631 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0068 6 583366 586631 Tpr6g0068 6 583366 586631 ECH
Tpr5g1455 5 27767525 27771102 Tpr6g0068 6 583366 586631 ECH
Tpr2g3937 2 41999365 42002381 Tpr6g0068 6 583366 586631 ECH
Tpr3g0549 3 5476585 5479561 Tpr6g0068 6 583366 586631 ECH
Tpr6g0068 6 583366 586631 Tpr5g1455 5 27767525 27771102 PCT