Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0549 ATGTCGGTTGCTTTGAGTTCAATTTGCAAAGAGAGGGTTTATTGGGAAGGACAAACAGAACATTGTTCTGTTGACCCTATCCTGATTTACCTGACAGTTGATAGTGTTGTTACGCCGATGCGTGTTTTGGAGTCTGATTCAATTGCTTCTGTCAAATTGAGGATTCAGCAATGTAAAGGTTTTGTGGTGAAGAAACAGAAGCTTGTTTTTAGTGGCAGAGAGCTTGCTCGTAATGATACACTTATTAAGGAGTATGGCGTCACCGATGGTAATGTTCTTCATTTGGTTTTACGCCTTTCGGATATTCTTTTCATTGTTGTTAGGACAGTTTCTGGTAAGGAATTTGAGTTTCATATTGATAGGCATAGAAATGTGGGGTATCTTAAACAAAGGATTAGGAAAAAAGTGGAAGGTTTTATTGATCTCGAGGAACAAGAGCTTTTTTGTAATGATGAGATGCTCGATGATCAGATACTCTTTCATGATATATGTAAAGGGGATGATGATGTAGTTCATTTGATTATTAAGAAATCGGTTAAGGTTAGAACTACACCTATTCACAATGATTTGAAGATTTCTGTTGAGGCTCCTATACCGGATGAGAGAATCGATCAGGGAGTGTTACAAGTAGAAGATAATAAGAATAGGATCAAACAGATTCAGATAGGAAAGTTACCACCTGGTGTCAGTTTCTGGTTGGAACCTATTGTTGTGAATCCCAAGATCAATTTTTTGCCTTTCCTTTGGGACATGATCAACTCCACATATGAGGGTTTGAAGAAAGGAAATCGTCCTATTAGATCCTCGGAAGGAACAGGAGGGACTTATTTTATGCAAGATTCAACTGGTCAGGAGCATGTTTCAGTTTTCAAGCCCTTGGATGAGGAACCAATGGCTGTGAACAACCCAAGAGGCCTACCAAGTTCAACAAACGGCGAAGGTTTAAAAAGAGGAACAAGGGTGGGAGAAGGAGCTTTGAGGGAGGTTGCAGCTTATGTATTAGATCATCCAAGGAGTGGGCCGCGTTTGGTGACAGGTGAAGAGATCGGGTTTTCCGGTGTTCCTCCTACTGTCATGGTGCAGTGCTTACACCAAGAGTTTCACCACCCAAATGGTTATGCTTGCTCATCAAAACATGTCAAGATTGGATCATTACAGAAGTTCGTGAATAATGACGGTAATTGTGAGGACATTGGACCCGGGGCATTTCCAGTGGAGGAGGTGCATAAGATAACTGTGCTTGATATAAGAACGGCTAATGCAGACAGACATGCTGGGAATATTTTGATTAGAAAGGAGGCAGGTGGCCAAATTAAGCTCATTCCCATTGATCATGGCTATTGTCTACCAGATAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCGCAAGCACGTCAGCCTTACTCACGTGAGACAGTTGATTACATCAATTCTTTGGATGCTGAAAAAGACATTGAACTTTTGAAACTTTATGGATGGGATATTCCACTTCAGTGTGCGCGAACACTTCGCATTTCCACAATGCTTCTGAAGAAAGGGGTTGCAAGAGGTCTTACTCCATATGCAATTGGAAGCATCATGTGTCGGGAAAATTTGAACAAGGAATCTGTAATTGAGGAAATTATAAGTGAAGCACAAGATTCCTTGGGTCCTGGCATGGACGAATCAGCGTTTCTTGATTCCATCTCCCAAATCATGGATTCCCATCTTGATAAGCTCGCGATATAG 1734 0.4112 MSVALSSICKERVYWEGQTEHCSVDPILIYLTVDSVVTPMRVLESDSIASVKLRIQQCKGFVVKKQKLVFSGRELARNDTLIKEYGVTDGNVLHLVLRLSDILFIVVRTVSGKEFEFHIDRHRNVGYLKQRIRKKVEGFIDLEEQELFCNDEMLDDQILFHDICKGDDDVVHLIIKKSVKVRTTPIHNDLKISVEAPIPDERIDQGVLQVEDNKNRIKQIQIGKLPPGVSFWLEPIVVNPKINFLPFLWDMINSTYEGLKKGNRPIRSSEGTGGTYFMQDSTGQEHVSVFKPLDEEPMAVNNPRGLPSSTNGEGLKRGTRVGEGALREVAAYVLDHPRSGPRLVTGEEIGFSGVPPTVMVQCLHQEFHHPNGYACSSKHVKIGSLQKFVNNDGNCEDIGPGAFPVEEVHKITVLDIRTANADRHAGNILIRKEAGGQIKLIPIDHGYCLPDKFEDCTFDWLYWPQARQPYSRETVDYINSLDAEKDIELLKLYGWDIPLQCARTLRISTMLLKKGVARGLTPYAIGSIMCRENLNKESVIEEIISEAQDSLGPGMDESAFLDSISQIMDSHLDKLAI* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0549 577 SUPERFAMILY Protein kinase-like (PK-like) 420 575 IPR011009 -
Tpr3g0549 577 Pfam Phosphatidylinositol 3- and 4-kinase 271 524 IPR000403 -
Tpr3g0549 577 SUPERFAMILY Ubiquitin-like 99 177 IPR029071 -
Tpr3g0549 577 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 262 559 IPR000403 -
Tpr3g0549 577 Gene3D - 30 100 - -
Tpr3g0549 577 Gene3D - 104 191 - -
Tpr3g0549 577 ProSiteProfiles Ubiquitin domain profile. 29 98 IPR000626 GO:0005515
Tpr3g0549 577 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 576 IPR044571 -
Tpr3g0549 577 Pfam Ubiquitin family 35 99 IPR000626 GO:0005515
Tpr3g0549 577 Pfam Ubiquitin family 105 177 IPR000626 GO:0005515
Tpr3g0549 577 SMART ubq_7 103 176 IPR000626 GO:0005515
Tpr3g0549 577 SMART ubq_7 27 98 IPR000626 GO:0005515
Tpr3g0549 577 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 2 576 - -
Tpr3g0549 577 CDD Ubl_ubiquitin_like 105 174 - -
Tpr3g0549 577 SUPERFAMILY Ubiquitin-like 37 100 IPR029071 -
Tpr3g0549 577 ProSiteProfiles Ubiquitin domain profile. 103 177 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0549 Tpr-Chr3 5476585 5479561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0549 2 576 Acyl Lipid Metabolism Gene Families AT5G24240 56.477 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0549 - - gmx:100809172 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0549 3 5476585 5479561 Tpr3g0549 3 5476585 5479561 ECH
Tpr3g0549 3 5476585 5479561 Tpr5g1455 5 27767525 27771102 ECH
Tpr3g0549 3 5476585 5479561 Tpr6g0068 6 583366 586631 ECH
Tpr2g3937 2 41999365 42002381 Tpr3g0549 3 5476585 5479561 PCT