Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3454 ATGGATGGAGGTGGCGGTAGCTTGGGACAGGCCTCAGCGGTAGTGGGGGTACCACAGCCGCTTGAGTGGAAATTCTCGCAAGTGTTCGGCGAAAGGACAGCCGGGGAAGAAGTTCAGGATGTTGATATTATATCTGCCATTGAGTTTGATGGAACCGGGGACCACCTTGCCACTGGAGATCGTGGTGGCCGCGTTGTTTTATTTGAAAGAGGAGATACAAGGGATCGTGATGGTGACCAGAAAGACTTAGAGAGGATGGATTATTCTATCAATAGGCATCCTGAGTTTCGTTACAAAACTGAATTTCAGAGCCATGAACCTGAGTTTGACTATCTTAAGAGTTTGGAAATTGAGGAGAAAATCAATAAAATCAGATGGTGTCAGACAGCTAATGGGGCGCTCTTTATTCTCACTACGAATGACAAAACCATTAAATTTTGGAAGGTCCAAgagaagaaggtgaagaaaGTTTGTCACATGAATGCTGCTGCTTCTCATCCTATGGGTAATGGCCCGATTGTTGGGTCAAGCACATCAAACAATTCCAGACCCCATTCGATTAATGGAGGGTGTAACAATATACTCTCTAACGGTGCTTCATTTCCATATGGGGATATTCAGTCCCTACATTTGCCTGTTGTGGTGACTAGTCATGAGACAAGTTCTGTGGCTAGATGTCGAAGAGTCTATGCTCATGCCCATGACTATCATATCAATTCTATCTCAAATAACAGTGATGGAGAAACTTTTATATCAGCTGATGATCTCCGAATAAATCTTTGGAACTTAGAAATAAGCAGTCAAAGTTTTAATATTGTTGATGCCAAGCCTGCAAACATGGAGGATCTAACTGaggTGATCACTTCAGCAGAATTTCATCCTTCTCATTGTAATATGCTAGCATACAGTAGCTCTAAAGGCTCAATCCGTCTTATTGATATGCGGCAATCAGCTCTATGTGATACTCATAGCAaattATTTGAGGAACAGATGGCATCTGCTTCACGATCATTTTTTACAGAAATAATTGCTTCAATttcaaatatcaagttttccaaagaTGGAAGACATATACTTAGCCGTGACTATATGACTCTTAAGCTATGGGACATAAATATGGATTCTGGTCCAGTTGCTACTTTCCAGGTTCATGAATATTTAAGACCTAAGCTTTGTGATTTATATGAAAATGATTCCATATTCGACAAATTTGAGTGCTGTCTTAGTGGAGATGGACTCCGAGTGGCAACAGGTTCATACAGCAATCTGTTCCGTGTGTTTGGTTGTTCTGAAGGCAGCATTGAAGCGACAACTCTGGAAGCCACCAAGACCCCAATGAGGAGACAAGTTCAAGTTCCTTCGAGGCCTTCAAGATCTATAGGCACTTCTCCCCATGTTCTCAGGCGAGGAACAGATAATCCTGGAGTTGATACAAATGGAAATGCCTTTGATTTCGCTACGAAGTTGCTTCATCTAGCTTGGCATCCCATTGAGAACTCACTAGCCTGTGCTGCGTCAAATAGCCTTTTCTTGTATTATGCATGA 1545 0.4104 MDGGGGSLGQASAVVGVPQPLEWKFSQVFGERTAGEEVQDVDIISAIEFDGTGDHLATGDRGGRVVLFERGDTRDRDGDQKDLERMDYSINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFILTTNDKTIKFWKVQEKKVKKVCHMNAAASHPMGNGPIVGSSTSNNSRPHSINGGCNNILSNGASFPYGDIQSLHLPVVVTSHETSSVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISSQSFNIVDAKPANMEDLTEVITSAEFHPSHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQMASASRSFFTEIIASISNIKFSKDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCSEGSIEATTLEATKTPMRRQVQVPSRPSRSIGTSPHVLRRGTDNPGVDTNGNAFDFATKLLHLAWHPIENSLACAASNSLFLYYA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3454 514 Gene3D - 39 187 IPR015943 GO:0005515
Sto9g3454 514 Gene3D - 206 507 IPR015943 GO:0005515
Sto9g3454 514 PIRSF PPA2_B55 16 514 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 Pfam WD domain, G-beta repeat 226 262 IPR001680 GO:0005515
Sto9g3454 514 SUPERFAMILY WD40 repeat-like 42 506 IPR036322 GO:0005515
Sto9g3454 514 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 514 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 SMART WD40_4 108 148 IPR001680 GO:0005515
Sto9g3454 514 SMART WD40_4 34 69 IPR001680 GO:0005515
Sto9g3454 514 SMART WD40_4 273 313 IPR001680 GO:0005515
Sto9g3454 514 SMART WD40_4 374 428 IPR001680 GO:0005515
Sto9g3454 514 SMART WD40_4 332 370 IPR001680 GO:0005515
Sto9g3454 514 SMART WD40_4 223 262 IPR001680 GO:0005515
Sto9g3454 514 MobiDBLite consensus disorder prediction 452 473 - -
Sto9g3454 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 108 122 IPR018067 -
Sto9g3454 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 232 246 IPR018067 -
Sto9g3454 514 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 514 - -
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 48 68 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 95 123 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 124 152 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 234 261 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 262 289 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 290 318 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 319 346 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 347 374 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 375 400 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 401 427 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 483 512 IPR000009 GO:0000159|GO:0019888
Sto9g3454 514 MobiDBLite consensus disorder prediction 452 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3454 Sto-Chr9 33955703 33962554 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3454 K04354 - tcc:18588044 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3454 9 33955703 33962554 Sto9g3454 9 33955703 33962554 ECH
Sto5g1043 5 7015386 7021547 Sto9g3454 9 33955703 33962554 ECH
Sto9g0221 9 2028638 2036338 Sto9g3454 9 33955703 33962554 ECH
Sto1g0363 1 2940133 2948255 Sto9g3454 9 33955703 33962554 ECH