Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0363 ATGAACGGTGGCGATGAGGTCGTCGCAGCTCCGGCGGGTCCACCGCAGCCGCTGGAGTGGAAATTCTCTCAGGTTTTCGGCGAACGTACGGCCGGCGAAGAAGTTCAGGAAGTGGACATAATTTCTGCCATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTTGTTCTCTTTGAGAGGACAGATACAAAAGATCATGGTGGATCTAGAAGGGATTTGGAGAGGATGGACTATTCTATGAGTAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAACCTGAGTTTGACTATCTCAAGAGCTTGGaaatagaagagaaaattaacaaaattagaTGGTGCCAAACAGCTAATGGTGCACTATTTCTTCTATCTACAAATGACAAAACCATAAAATTTTGGAAGGTCCAAGAAAAGAAAGTCAAGAAAATTTCTGATATGAATGTTGACCCTTCAAAAGCTATGGGAAATGGCGGTATTGCTAGTTCAAGCAATTCTAGTAACCCTAGGCCATATCTTGCAAATGGAGGATCTCCAGAAAAATCATACAGTAATTTAAGCAATGACTTGTCATTTCCACCTGGGGGCATTCCATCACTTCGACTACCCGTGGTAACCAGCCATGAGACCAGCCTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGTGATGGAGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATCAGCAATCAAAGTTTTAATATTATTGATGTAAAGCCTGCAAACATGGAGGATCTGACAGAGGTTATAACATCAGCAGAGTTCCACCCTACACATTGCAACACGTTGGCATATAGCAGTTCAAAGGGTTCTATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATTCCAAACTATTTGAGGAACAGGAGGCCCCTGGGTCCAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGGAAAGGATGGAAGATACATACTTAGCCGTGATTACATGACTCTAAAGTTATGGGACATTAATATGGATTCTGGCCCAGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGCTGTGTGATTTATATGAAAATGATTCGATTTTTGACAAGTTCGAATGTTGTCTGAGTGGTGATGGTTTGCGTGTGGCAACTGGTTCTTATAGCAATCTTTTCCGTGTGTTTGGTTGTACACCGGGAAGTACTGAGGCTTCAACTTTGGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCCGACCCCATCAAGGCCTTCTAGATCACTGGGGAGTAGTATAACACGGGTTGTAAGACGAGGTGTGGATAGCACCGGTATTGATGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTACTGCACTTAGCATGGCATCCAACTGAAAATTCAATCGCTTGTGCTGCTGCAAATAGCCTGTACATAAGAAAATGTGATTGTAGCTCTCCTACAACAGATACTAAGGGATGTTCAATATCTTCTGCCACTAGGATTAAGATAAAAATGTAG 1620 0.4123 MNGGDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISDMNVDPSKAMGNGGIASSSNSSNPRPYLANGGSPEKSYSNLSNDLSFPPGGIPSLRLPVVTSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIIDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSTEASTLEASKNPMRRQVPTPSRPSRSLGSSITRVVRRGVDSTGIDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYIRKCDCSSPTTDTKGCSISSATRIKIKM 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0363 539 Pfam WD domain, G-beta repeat 226 262 IPR001680 GO:0005515
Sto1g0363 539 Gene3D - 220 323 IPR015943 GO:0005515
Sto1g0363 539 MobiDBLite consensus disorder prediction 167 197 - -
Sto1g0363 539 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 512 - -
Sto1g0363 539 SUPERFAMILY WD40 repeat-like 39 506 IPR036322 GO:0005515
Sto1g0363 539 MobiDBLite consensus disorder prediction 437 462 - -
Sto1g0363 539 PIRSF PPA2_B55 11 515 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 512 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 Gene3D - 324 534 IPR015943 GO:0005515
Sto1g0363 539 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 232 246 IPR018067 -
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 234 261 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 262 289 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 290 318 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 319 346 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 347 374 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 375 400 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 401 427 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 484 513 IPR000009 GO:0000159|GO:0019888
Sto1g0363 539 SMART WD40_4 273 313 IPR001680 GO:0005515
Sto1g0363 539 SMART WD40_4 31 66 IPR001680 GO:0005515
Sto1g0363 539 SMART WD40_4 223 262 IPR001680 GO:0005515
Sto1g0363 539 SMART WD40_4 105 145 IPR001680 GO:0005515
Sto1g0363 539 SMART WD40_4 374 428 IPR001680 GO:0005515
Sto1g0363 539 SMART WD40_4 332 370 IPR001680 GO:0005515
Sto1g0363 539 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Sto1g0363 539 Gene3D - 36 204 IPR015943 GO:0005515
Sto1g0363 539 MobiDBLite consensus disorder prediction 158 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0363 Sto-Chr1 2940133 2948255 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0363 K04354 - gmx:100799449 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0221 9 2028638 2036338 Sto1g0363 1 2940133 2948255 CCT
Sto9g0221 9 2028638 2036338 Sto1g0363 1 2940133 2948255 ECH
Sto1g0363 1 2940133 2948255 Sto1g0363 1 2940133 2948255 ECH
Sto1g0363 1 2940133 2948255 Sto5g1043 5 7015386 7021547 ECH
Sto1g0363 1 2940133 2948255 Sto9g3454 9 33955703 33962554 ECH