Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1043 ATGAATGGAGGGGGTGAGGGCAGCGTGGAACACCCAGCCTCAACGGCAGCGGGGGATCCACAGCCTCTCGAGTGGAAATTTTCCCAAGTGTTCGGCGAAAGGGCAGCCGGGGAAGAAGTACAGGAGGTTGATATTATATCGGCAATTGAATTTGATAAGACTGGTGACCACCTTGCAACGGGAGATCGTGGTGGTCGAGTTGTTTTATTTGAAAGAACAGATAAAGGGGATCATGGTAGTCTACGGAAAGATTTAGAGAGGATGGATTGTTTGATCAACCGACATCCTGAGTTTCGTTATAAAACTGAGTTTCAGAGCCACGAACCAGAGTTTGACTATCTCAAGAGTTTGGAAATTgaggagaaaataaataaaatcagaTGGTGCCAGACAGCTAATGGGGCTCTTTTTCTTCTATCTACAAACGACAAAACCATTAAGTTTTGGAAGGTCCAAGAGAGAAAGGTGAAGAaagtgtgtcaaatgaatgcTGTTCCTTCTAATTCTACAGGAAATGGTTTAGTTGTTGGTTCAAGCACTTCAAATAGTTCCAACTCCTGTATTGCTAATGGAGCATGTAACAAGATACCCTTCAACAATGCTTCAATTCCATATGGGGATGTTCAATCCCTACATTTGCCTGTTGTGGTGACCAGTCATGAGACAAGTCCTGTGGCTAGATGTAGAAGAATTTATGCTCATGCCCATGATTATCATATCAACTCTATTTCAAACAACAGAACATCAAACAGTGATATGAATTCTGAGCTGTGCTTAAAGGTGATCACTTCAGCAGTATTTCATCCTACTCATTGTAACATGCTAGCATACAGTAGCTCTAAGGGCTCTGTTCGTCTTATTGATATGCGACAATCAGCTTTATGTGATACTCATAGTAAATTATTTGAGGAACAGGAGGCACCTGGTTCTAAATCTTTCTTCACTGAAATAATTGCCTCAGTTTCAGATGTCAAGTTTTCTAAGGATGGAAGACATCTACTTAGTCGTGACTACATGACTCTTAAGCTATGGGATATAAACATGAATTCTGGCCCTGTTGCTACTTTCCAGGTTCATGAATATTTAAGACCAAAGCTTTGTGATTTATATGAAAATGATTCCATCTTCGATAAATTTGAGTGCTGTCTCAGCGGAGATGGACTCCGAGTGGCAACAGGTTCATACAGCAACTTGTTCCGTGTATTTGGTTGCTCCGAAGGCAGCACAGAAGCAACAACACTAGAAGCCACGAAGAACCCAATGAGGAGACAAGGTCAAACTACATCTCGGCCTCCTAGATCTCTAGGCACCCTTCCCCGTGTTCTCAGTCGAGATAATTATGACATTGATGCAAATGGGAATGCCTTCGATTTCACGACCAAGTTGCTTCATCTGGCATGGCATCCAACTGAGAACTCCATTGCTTGTGCGGCTTCAAATAGCCTTTACATGTATTATGCTTAA 1464 0.4119 MNGGGEGSVEHPASTAAGDPQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDKGDHGSLRKDLERMDCLINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQERKVKKVCQMNAVPSNSTGNGLVVGSSTSNSSNSCIANGACNKIPFNNASIPYGDVQSLHLPVVVTSHETSPVARCRRIYAHAHDYHINSISNNRTSNSDMNSELCLKVITSAVFHPTHCNMLAYSSSKGSVRLIDMRQSALCDTHSKLFEEQEAPGSKSFFTEIIASVSDVKFSKDGRHLLSRDYMTLKLWDINMNSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCSEGSTEATTLEATKNPMRRQGQTTSRPPRSLGTLPRVLSRDNYDIDANGNAFDFTTKLLHLAWHPTENSIACAASNSLYMYYA 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1043 487 PIRSF PPA2_B55 14 487 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 MobiDBLite consensus disorder prediction 418 434 - -
Sto5g1043 487 SUPERFAMILY WD40 repeat-like 44 482 IPR036322 GO:0005515
Sto5g1043 487 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 254 487 - -
Sto5g1043 487 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 2 249 - -
Sto5g1043 487 SMART WD40_4 252 288 IPR001680 GO:0005515
Sto5g1043 487 SMART WD40_4 307 345 IPR001680 GO:0005515
Sto5g1043 487 SMART WD40_4 36 71 IPR001680 GO:0005515
Sto5g1043 487 SMART WD40_4 349 403 IPR001680 GO:0005515
Sto5g1043 487 SMART WD40_4 110 150 IPR001680 GO:0005515
Sto5g1043 487 Gene3D - 24 225 IPR015943 GO:0005515
Sto5g1043 487 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 110 124 IPR018067 -
Sto5g1043 487 Gene3D - 231 486 IPR015943 GO:0005515
Sto5g1043 487 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 254 487 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 2 249 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 MobiDBLite consensus disorder prediction 1 22 - -
Sto5g1043 487 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 50 70 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 97 125 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 126 154 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 237 264 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 265 293 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 294 321 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 322 349 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 350 375 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 376 402 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 456 485 IPR000009 GO:0000159|GO:0019888
Sto5g1043 487 MobiDBLite consensus disorder prediction 418 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1043 Sto-Chr5 7015386 7021547 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1043 K04354 - nnu:104600770 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1043 5 7015386 7021547 Sto5g1043 5 7015386 7021547 ECH
Sto5g1043 5 7015386 7021547 Sto9g3454 9 33955703 33962554 ECH
Sto9g0221 9 2028638 2036338 Sto5g1043 5 7015386 7021547 ECH
Sto1g0363 1 2940133 2948255 Sto5g1043 5 7015386 7021547 ECH