Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto3g1765 | ATGAGCTGGACTGGAGGAGATTGGATGTGTGGAGCTTGCGAGCACATAAATTTCAAGAAAAGGGATGCATGCCAACGCTGTGGATACCCCAAGTATGGGGGCCCTGACCCTTCAACTTATGGTTACAATAGGACTGAAGCGTTAGCAGGGGACTGGTTTTGCACCACCATGAACTGTGGAGCTCACAACTATGCCAGCCGATCAAGCTGCTATAGATGTGGTGCAATCAAAGATGATTATGCATCTGTATACGGGGGAAACATGATGGCATCTGGAGGATACGGATCGGATGGCAGCTTCCCCCCGGGATGGAAGAGTGGCGACTGGATCTGCACTAGGACAGAATGCTTCAAGTGCAAAACACCAAGAGATTTTGTTTCTTCGAGTATGTTAGATGGAAAGAAGAGGAAACTCACCTCAACCAAAGAAGGAAGGTGGAAGAATCGACGTCTGCACTGCGTCACTGGTGGCTTCTTGTGGGAGAAGAAATGGATCACAAAGTATGGTGATCTCAGTTTGTAA | 522 | 0.4808 | MSWTGGDWMCGACEHINFKKRDACQRCGYPKYGGPDPSTYGYNRTEALAGDWFCTTMNCGAHNYASRSSCYRCGAIKDDYASVYGGNMMASGGYGSDGSFPPGWKSGDWICTRTECFKCKTPRDFVSSSMLDGKKRKLTSTKEGRWKNRRLHCVTGGFLWEKKWITKYGDLSL | 173 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto3g1765 | 173 | PANTHER | ZINC FINGER, RANBP2-TYPE-RELATED | 1 | 128 | - | - | |
| Sto3g1765 | 173 | Pfam | Zn-finger in Ran binding protein and others | 6 | 32 | IPR001876 | - | |
| Sto3g1765 | 173 | Pfam | Zn-finger in Ran binding protein and others | 49 | 76 | IPR001876 | - | |
| Sto3g1765 | 173 | SUPERFAMILY | Ran binding protein zinc finger-like | 3 | 34 | IPR036443 | - | |
| Sto3g1765 | 173 | ProSitePatterns | Zinc finger RanBP2-type signature. | 52 | 73 | IPR001876 | - | |
| Sto3g1765 | 173 | Gene3D | - | 42 | 79 | - | - | |
| Sto3g1765 | 173 | Gene3D | - | 1 | 35 | - | - | |
| Sto3g1765 | 173 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 4 | 33 | IPR001876 | - | |
| Sto3g1765 | 173 | PANTHER | ZINC FINGER PROTEIN | 1 | 128 | - | - | |
| Sto3g1765 | 173 | ProSitePatterns | Zinc finger RanBP2-type signature. | 8 | 27 | IPR001876 | - | |
| Sto3g1765 | 173 | SUPERFAMILY | Ran binding protein zinc finger-like | 99 | 124 | IPR036443 | - | |
| Sto3g1765 | 173 | SUPERFAMILY | Ran binding protein zinc finger-like | 44 | 79 | IPR036443 | - | |
| Sto3g1765 | 173 | SMART | zf_4 | 6 | 30 | IPR001876 | - | |
| Sto3g1765 | 173 | SMART | zf_4 | 50 | 76 | IPR001876 | - | |
| Sto3g1765 | 173 | SMART | zf_4 | 107 | 122 | IPR001876 | - | |
| Sto3g1765 | 173 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 48 | 79 | IPR001876 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto3g1765 | Sto-Chr3 | 13775309 | 13778588 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto3g1765 | - | - | gmx:100792208 | 236.884 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Sto12g1070 | 12 | 6716134 | 6718981 | Sto3g1765 | 3 | 13775309 | 13778588 | CCT | |
| Sto3g1765 | 3 | 13775309 | 13778588 | Sto1g0188 | 1 | 1322289 | 1323082 | ECH | |
| Sto3g1765 | 3 | 13775309 | 13778588 | Sto5g0834 | 5 | 5621635 | 5622280 | ECH | |
| Sto3g1765 | 3 | 13775309 | 13778588 | Sto3g1765 | 3 | 13775309 | 13778588 | ECH |