Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0834 ATGAGCAGACCAGGAGACTGGAACTGCAGGTCATGCAACTACCTCAACTTCCAAAGAAGAGAATCGTGCCAGCGATGTGGGGAAGCAAGGCTTGGCGGTGACTTCGGAGGGTTCGGCGGTAGAggctcttcctcttcctccttcgCCTTCACCACCGGACCCGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGCCAACTGTGGAGCCCACAACTTCGCTAGCCGCTCCAGCTGCTTCAAGTGTGGCGCCCCCAAGGAGGTCGACGGTGGTGGATTCGATATAGCCCCGGACATCACTCGACTCAGAGGCGGCTATGGCTCCGGCCGCCCTGGCTGGAAATCCGGTGACTGGATATGCACTAGGTCTGGATGCAACGAGCATAACTTTGCTAATAGAATAGAGTGTTATCGATGCAATGCACCAAGGGACTCTAATAGTACTGGAAGATCTCCATATTCGTCATAA 468 0.5278 MSRPGDWNCRSCNYLNFQRRESCQRCGEARLGGDFGGFGGRGSSSSSFAFTTGPDVRPGDWYCTVANCGAHNFASRSSCFKCGAPKEVDGGGFDIAPDITRLRGGYGSGRPGWKSGDWICTRSGCNEHNFANRIECYRCNAPRDSNSTGRSPYSS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0834 155 ProSiteProfiles Zinc finger RanBP2 type profile. 57 88 IPR001876 -
Sto5g0834 155 ProSiteProfiles Zinc finger RanBP2 type profile. 114 145 IPR001876 -
Sto5g0834 155 Gene3D - 2 32 - -
Sto5g0834 155 Gene3D - 110 146 - -
Sto5g0834 155 Gene3D - 52 88 - -
Sto5g0834 155 ProSitePatterns Zinc finger RanBP2-type signature. 118 139 IPR001876 -
Sto5g0834 155 SMART zf_4 5 29 IPR001876 -
Sto5g0834 155 SMART zf_4 59 85 IPR001876 -
Sto5g0834 155 SMART zf_4 116 142 IPR001876 -
Sto5g0834 155 SUPERFAMILY Ran binding protein zinc finger-like 105 146 IPR036443 -
Sto5g0834 155 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Sto5g0834 155 SUPERFAMILY Ran binding protein zinc finger-like 53 88 IPR036443 -
Sto5g0834 155 Pfam Zn-finger in Ran binding protein and others 3 27 IPR001876 -
Sto5g0834 155 Pfam Zn-finger in Ran binding protein and others 57 87 IPR001876 -
Sto5g0834 155 Pfam Zn-finger in Ran binding protein and others 114 143 IPR001876 -
Sto5g0834 155 PANTHER ZINC FINGER PROTEIN 1 147 - -
Sto5g0834 155 SUPERFAMILY Ran binding protein zinc finger-like 2 32 IPR036443 -
Sto5g0834 155 ProSitePatterns Zinc finger RanBP2-type signature. 61 82 IPR001876 -
Sto5g0834 155 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Sto5g0834 155 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0834 Sto-Chr5 5621635 5622280 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0834 - - gmx:100811107 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0834 5 5621635 5622280 Sto5g0834 5 5621635 5622280 ECH
Sto3g1765 3 13775309 13778588 Sto5g0834 5 5621635 5622280 ECH