Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0188 ATGAGTAGGCCCGGAGACTGGAACTGCAGGTCATGCCAACACTTGAACTTTCAAAGGCGTGACTCGTGCCAGCGATGTGGGGATTCCAAATACGGAGATAGGATTGACTTTGGCGGATTCGGAACCCGGGTCGGGCCATCCTTCGGGTTCAGCAGCGGGTCTGATGTTCGGCCCGGTGACTGGTATTGTGCTGCTGGTAACTGTGGAGCACATAACTTCGCTAGCCGCTCCAGCTGCTTCAAGTGTGGTGCCTTCAAGGATGACTTCACCTGTGGCTTTAACTCCGACATGTCGCGCGGTAGAGTTTTTGGcagtggcggcggcggcggcggcggcaccCGACCCGGATGGAAATCCGGTGATTGGATATGTAACCGGTCAGGTTGCAATGAGCACAACTTTGCTAGCAGAACGGAATGCTTTAAATGCAGTGCTCCAAGGGACACGTACTAG 453 0.5011 MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYGDRIDFGGFGTRVGPSFGFSSGSDVRPGDWYCAAGNCGAHNFASRSSCFKCGAFKDDFTCGFNSDMSRGRVFGSGGGGGGGTRPGWKSGDWICNRSGCNEHNFASRTECFKCSAPRDTY 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0188 150 SUPERFAMILY Ran binding protein zinc finger-like 52 88 IPR036443 -
Sto1g0188 150 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
Sto1g0188 150 ProSitePatterns Zinc finger RanBP2-type signature. 122 143 IPR001876 -
Sto1g0188 150 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Sto1g0188 150 ProSiteProfiles Zinc finger RanBP2 type profile. 118 149 IPR001876 -
Sto1g0188 150 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Sto1g0188 150 Pfam Zn-finger in Ran binding protein and others 118 147 IPR001876 -
Sto1g0188 150 Pfam Zn-finger in Ran binding protein and others 57 84 IPR001876 -
Sto1g0188 150 Pfam Zn-finger in Ran binding protein and others 3 28 IPR001876 -
Sto1g0188 150 PANTHER BNAA03G57490D PROTEIN 1 149 - -
Sto1g0188 150 PANTHER ZINC FINGER PROTEIN 1 149 - -
Sto1g0188 150 SMART zf_4 5 29 IPR001876 -
Sto1g0188 150 SMART zf_4 59 85 IPR001876 -
Sto1g0188 150 SMART zf_4 120 146 IPR001876 -
Sto1g0188 150 SUPERFAMILY Ran binding protein zinc finger-like 110 148 IPR036443 -
Sto1g0188 150 ProSitePatterns Zinc finger RanBP2-type signature. 61 82 IPR001876 -
Sto1g0188 150 Gene3D - 2 32 - -
Sto1g0188 150 Gene3D - 114 149 - -
Sto1g0188 150 Gene3D - 51 88 - -
Sto1g0188 150 ProSiteProfiles Zinc finger RanBP2 type profile. 57 88 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0188 Sto-Chr1 1322289 1323082 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0188 - - gmx:100499847 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1765 3 13775309 13778588 Sto1g0188 1 1322289 1323082 ECH
Sto1g0188 1 1322289 1323082 Sto1g0188 1 1322289 1323082 ECH