Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto1g0300 | atggaaaacaaTTTACCTGTGATGGCGAAGCGAGTGTGGAGCATAGCGCGCGTGGTGTATTACATGTTGCGAAAGGGCATTTCCAAGGGCAAGCTCATGTTGGATCTCAACATCTTCCTCAAACGCCGTACCAAGCTCGCCGGAAAAGCCATCGCCAACCTCATCtccctccaccaccaccacgccgCCGCCGCATCCTCCCCCGACGCCGCCGCCGCCCACCTCCAGTTCTCCGCCGCACGCGGCGAGTACGAGTTCAGCTGCAGCAACACTCCCAATAACTATCTTCACAACTTCTTTCCCACCAAGCACAACCGCCACTCTCACTTCTTCGCGTGTGCTCACGCGCCTCTCAcgttggatgatgacgtggcgggCGTTAACAATGCACTTAGGGTTACCTTGGAGATGTTGGAAAATAATAAGGGGAAGAGCGTGGTGGAGGCTGCCGCGGCGTCGCCCGCGCTTCCCGGGTTCGGGCGGACCCCGATGGCGAGGCAGTTGAGGGTGACGGACTCGCCGTTCCCGGTGCAGGACGGGGACGAGGATCGGGACCACCAGGTGGACAAGGCGGCGGAAGAGTTCATAAAGAGGTTTTACAAGGAATTGAGGAAGCAAGCTTGA | 624 | 0.5321 | MENNLPVMAKRVWSIARVVYYMLRKGISKGKLMLDLNIFLKRRTKLAGKAIANLISLHHHHAAAASSPDAAAAHLQFSAARGEYEFSCSNTPNNYLHNFFPTKHNRHSHFFACAHAPLTLDDDVAGVNNALRVTLEMLENNKGKSVVEAAAASPALPGFGRTPMARQLRVTDSPFPVQDGDEDRDHQVDKAAEEFIKRFYKELRKQA | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto1g0300 | 207 | Pfam | Cotton fibre expressed protein | 186 | 206 | IPR008480 | - | |
| Sto1g0300 | 207 | PANTHER | AVR9/CF-9 RAPIDLY ELICITED PROTEIN | 1 | 206 | - | - | |
| Sto1g0300 | 207 | PANTHER | AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED | 1 | 206 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto1g0300 | Sto-Chr1 | 2276272 | 2276895 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto1g0300 | - | - | gsj:114386903 | 246.514 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Sto9g0285 | 9 | 2696481 | 2697047 | Sto1g0300 | 1 | 2276272 | 2276895 | CCT | |
| Sto9g0285 | 9 | 2696481 | 2697047 | Sto1g0300 | 1 | 2276272 | 2276895 | ECH | |
| Sto10g3161 | 10 | 40952673 | 40954262 | Sto1g0300 | 1 | 2276272 | 2276895 | ECH | |
| Sto8g2051 | 8 | 13333690 | 13335744 | Sto1g0300 | 1 | 2276272 | 2276895 | ECH | |
| Sto1g0300 | 1 | 2276272 | 2276895 | Sto1g0300 | 1 | 2276272 | 2276895 | ECH | |
| Sto1g0300 | 1 | 2276272 | 2276895 | Sto5g0667 | 5 | 4497583 | 4498143 | ECH | |
| Sto1g0300 | 1 | 2276272 | 2276895 | Sto9g3471 | 9 | 34076281 | 34078765 | ECH |