Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0255 ATGATCTGCTCAACCAGATGCGCTTTCCTGAGCAACTCAGGGTTAGGTGGGTGTAGCAGCTTGTGTGATGCGCAGAGAAAGCGTTCAGCTGCTTTCAGGGTGGTGTGTATGACCCCAAGCAGCAGCAGGTCGGGTGATAGAAACGGCAGCGTTGTGATGGAGACGCCGttgaaagaattgaaaaaggaaCCCACGGTGGCTGACGTGGACGATAACCCGATCTCCGCCGGCGGCCCTCAAGATGTGTACGGCGAGGATAGGGCAACGGAGGATCACTTTGTTACCCCTTGGAGTGTCTCTGTTGCTAGTGGTTATACATTGTTGCGAGATCCCCACTTCAACAAAGGTCTGGCCTTCACTGAAAAAGAGAGGGATGCCCACTACTTGCGTGGTCTTCTTCCCCCATCAGTTATTCCTCAAGAAACTCAGGTGAAGAAAATGATCCAGCACATACGCCAGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAATGAACGGCTATTTTACAAAGTTCTTATTGATCACGTTGAAGAGTTACTCCCAGTTGTATACACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGGAGCATCTTTATGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAAGATCCTTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAGGTCATAGTTGTAACTGATGGAGAACGAATCCTGGGTCTTGGGGATCTTGGTTGTCAGGGGATGGGAATACCTGTAGGAAAACTTTCCTTATATACAGCACTTGGAGGAGTCCGCCCTTCAGCTTGTTTGCCTATTACAATTGATGTGGGTACAAACAATGAGAAGCTGCTGAATGATGAATTATATATTGGGCTAAAGCAAAGACGAGCAACTGGGCAGGAATATGCTGAACTTATGCACGAATTTATGACAGCAGTCAAGCAAACTTATGGGGAAAAGGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTTGAGAAATATAGATCCACTCATCTGGTTTTCAATGATGATATTCAGGGAACAGCATCTGTTGTCCTTGCTGGACTAGTTGCAGCTCTGAAATTGGTTGGGGGTAACTTAGCTGATCACAGATTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATGCCCCACTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTCAGTTCCCGTAAAGATTCACTCCAACATTTTAAGAAGCCCTGGGCTCATGAGCATGAACCTGTTAAAAATCTTGTAGATGTTGTTAATCGAATTAAGCCAACAGTGTTGATTGGAACATCAGGACAAGGAAGAGCTTTCACTAAAGAGGTGGTTGAGGCTATGGCCTCTATTAATGAGAGACCTATTATTCTTGCTCTTTCCAACCCTACGTCACAGTCAGAATGTACTGCTGAAGAAGCCTACAAGTGGAGCCAGGGACGTGCCATTTTTGCAAGTGGGAGCCCATTTCCCCCGGTTGAGTACGAAGGGAAAGTGTTTGTGCCTGGCCAGGCCAATAATGCATACATATTTCCTGGTTTCGGTCTTGGTTTAATAATGTCTGGGACCATTCGAGTGCATGATGACCTGCTCCTGGCTGCCTCGGAGGCTTTGGCTGCACAAGTGACCCAAGAGAACTTTGATAAGGGACTCATATACCCACCATTCACCAACATCAGAAAGATTTCAGCACACATAGCTGCCAATGTTGCTGCTAAGGCTTATGAGCTTGGTTTGGCCACTCGCCTTCCTCAGCCTAAAGATTTGGTGAAGTTTGCTGAGAGCTGTATGTATACCCCAGCCTACAGAAGTTACCGGTGA 1932 0.457 MICSTRCAFLSNSGLGGCSSLCDAQRKRSAAFRVVCMTPSSSRSGDRNGSVVMETPLKELKKEPTVADVDDNPISAGGPQDVYGEDRATEDHFVTPWSVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPSVIPQETQVKKMIQHIRQYQVPLQKYMAMMDLQERNERLFYKVLIDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELMHEFMTAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVKNLVDVVNRIKPTVLIGTSGQGRAFTKEVVEAMASINERPIILALSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVEYEGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAAQVTQENFDKGLIYPPFTNIRKISAHIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRSYR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0255 643 SMART malic_2 168 349 IPR012301 GO:0004471
Ssu8g0255 643 PANTHER MALIC ENZYME-RELATED 18 643 - -
Ssu8g0255 643 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 82 358 IPR046346 -
Ssu8g0255 643 PANTHER MALIC ENZYME 18 643 - -
Ssu8g0255 643 PRINTS Malic enzyme signature 270 292 IPR001891 GO:0004470|GO:0004471
Ssu8g0255 643 PRINTS Malic enzyme signature 386 402 IPR001891 GO:0004470|GO:0004471
Ssu8g0255 643 PRINTS Malic enzyme signature 174 198 IPR001891 GO:0004470|GO:0004471
Ssu8g0255 643 PRINTS Malic enzyme signature 355 371 IPR001891 GO:0004470|GO:0004471
Ssu8g0255 643 PRINTS Malic enzyme signature 234 263 IPR001891 GO:0004470|GO:0004471
Ssu8g0255 643 PRINTS Malic enzyme signature 330 348 IPR001891 GO:0004470|GO:0004471
Ssu8g0255 643 PRINTS Malic enzyme signature 489 505 IPR001891 GO:0004470|GO:0004471
Ssu8g0255 643 Pfam Malic enzyme, N-terminal domain 168 349 IPR012301 GO:0004471
Ssu8g0255 643 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Ssu8g0255 643 Pfam Malic enzyme, NAD binding domain 359 611 IPR012302 GO:0051287
Ssu8g0255 643 Gene3D - 102 356 IPR037062 GO:0004471
Ssu8g0255 643 CDD NAD_bind_1_malic_enz 359 637 - -
Ssu8g0255 643 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 359 642 IPR036291 -
Ssu8g0255 643 Gene3D - 357 643 - -
Ssu8g0255 643 ProSitePatterns Malic enzymes signature. 355 371 IPR015884 GO:0004471
Ssu8g0255 643 PIRSF ME 62 643 IPR001891 GO:0004470|GO:0004471
Ssu8g0255 643 SMART Malic_M_2 359 612 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0255 Ssu-Chr8 3760322 3765783 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0255 K00029 - gmx:100791514 1212.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3315 4 83453910 83459061 Ssu8g0255 8 3760322 3765783 ECH
Ssu5g3270 5 81850263 81855840 Ssu8g0255 8 3760322 3765783 ECH
Ssu8g0255 8 3760322 3765783 Ssu8g0255 8 3760322 3765783 ECH
Ssu8g0255 8 3760322 3765783 Ssu1g3257 1 84811141 84816012 ECH
Ssu8g0255 8 3760322 3765783 Ssu4g3315 4 83453910 83459061 PCT