Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3257 ATGATGTGGGTCAATAGGCACAGGCACACCATTGATACTCTGGCACCACCTACAAAAAGACTATTCCTTGGGTTAGGTGGAAGTTGCGGAGAGAAAAAGTTGTTGGCAGTGATCATGTCGAGCGCGTTGAAGGAGATGAGGAACGGTGGTGAGGTTTCGGTGACGGAGGATTGTAGCAACGGTCATGGCGGAGGTGTTAGGGACTTCTATGGAGAGGATTGTGCCACAGAGGACCAGCTTATCACCCCATGGACTTTTTCTGTGGCCAGTGGGTGCAGTTTGCTGAGAGATCCACGCTACAACAAAGGGCTGGCCTTCACTGAGAGGGAGAGAGATGCTCATTACTTGCGTGGCCTTTTGCCTCCAGCTGTCTTGACTCAGGAACTTCAGGAAAAGAGGATGATGCACAATCTTCGTCAGTATGAGGTTCCTCTGCATAGGTACACGGCCATGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAGCTTCTGATCGATAATGTTGAGGAACTGCTTCCTGTTGTTTACACTCCAACGGTTGGAGAAGCATGCCAGAAATACGGAAGCATTTTTAGGCGTCCTCAGGGTCTATATATCAGTTTGAAGGAGAAAGGCAAGATCCTTGAAGTACTGAAAAACTGGCCAGAAAAGAGTATTCAAGTTATTGTTGTGACCGATGGTGAGCGTATATTAGGACTTGGAGATCTTGGTTGCCAGGGAATGGGAATTCCTGTTGGGAAACTTTCTCTCTATACTGCATTAGGAGGTGTCCGTCCTTCATCATGCTTGCCTATAACCATTGATGTTGGCACAAACAATGAGAAGCTGCTGAATGATGAGTTCTACATTGGGCTTAGACAAAAGCGGGCAACTGGGAAGGAATATGCGGAGCTTTTAGAGGAGTTTATGGGCGCAGTTAAACAGCACTATGGGGAGAAAGTTCTCATACAGTTTGAAGATTTTGCCAATCATAATGCATTTGATCTGCTGGCAAAATACAGCTCATCTCATCTTGTTTTTAACGATGATATCCAGGGTACAGCATCTGTTGTATTGGCAGGATTGCTTGCATCCCTGAAATTAGTTGGGGGAACCTTAGCTGACCACACCTTCTTATTCCTGGGTGCTGGAGAGGCTGGAACTGGTATAGCTGAGCtgatagctcttgagatttcaAAGCAGACAAAAGCTCCAGTGGAAGAGACCCGCAAGAAGATCTGGCTTGTGGACTCAAAGGGACTTATTGTTAGCTCACGTCTGGAACAACTTCAGCACTTCAAAAAGCCTTGGGCCCATGAGCATGAACCTGTAAAGGGGCTTCTAGATGCTGTCAAGGCAATCAAGCCAACCGTTTTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAAGGAGGTGGTTGAAACCATGGCATCCTTGAATGAGAAACCGCTCATTCTTGCTCTCTCCAATCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTATGCATGGAGCAAGGGTAGAGCAATCTTTGCTAGTGGAAGCCCATTCGATCCTGTTGAATATGAAGGAAAAGTTTTTGTTCCTGGACAGGCCAACAATGCTTACATATTTCCTGGTTTTGGCTTGGGTTTGATAATCTCTGGTGCAATCCGTGTGCGCGATGAGATGCTCTTGGCAGCTTCGGAAGCTTTGGCTGCACAAGTATCACAGGAGAACTATGATAAGGGACTGATTTACCCTCCTTTCTCGAACATCAGAAAGATATCAGCCCACATTGCTGCTAATGTCGCGGCTAAGGCATATGATCTAGGTCTGGCTTCTCATCTACCTAGGCCTAAGGATCTTGTCAAATATGCAGAAAGTTGCATGTACAGCCCAGGCTACCGAAGCTACCGTTGA 1893 0.4606 MMWVNRHRHTIDTLAPPTKRLFLGLGGSCGEKKLLAVIMSSALKEMRNGGEVSVTEDCSNGHGGGVRDFYGEDCATEDQLITPWTFSVASGCSLLRDPRYNKGLAFTERERDAHYLRGLLPPAVLTQELQEKRMMHNLRQYEVPLHRYTAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYAELLEEFMGAVKQHYGEKVLIQFEDFANHNAFDLLAKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWLVDSKGLIVSSRLEQLQHFKKPWAHEHEPVKGLLDAVKAIKPTVLIGSSGVGKTFTKEVVETMASLNEKPLILALSNPTSQSECTAEEAYAWSKGRAIFASGSPFDPVEYEGKVFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSQENYDKGLIYPPFSNIRKISAHIAANVAAKAYDLGLASHLPRPKDLVKYAESCMYSPGYRSYR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3257 630 Pfam Malic enzyme, NAD binding domain 346 598 IPR012302 GO:0051287
Ssu1g3257 630 SMART Malic_M_2 346 599 IPR012302 GO:0051287
Ssu1g3257 630 ProSitePatterns Malic enzymes signature. 342 358 IPR015884 GO:0004471
Ssu1g3257 630 Gene3D - 89 343 IPR037062 GO:0004471
Ssu1g3257 630 PRINTS Malic enzyme signature 257 279 IPR001891 GO:0004470|GO:0004471
Ssu1g3257 630 PRINTS Malic enzyme signature 221 250 IPR001891 GO:0004470|GO:0004471
Ssu1g3257 630 PRINTS Malic enzyme signature 342 358 IPR001891 GO:0004470|GO:0004471
Ssu1g3257 630 PRINTS Malic enzyme signature 476 492 IPR001891 GO:0004470|GO:0004471
Ssu1g3257 630 PRINTS Malic enzyme signature 317 335 IPR001891 GO:0004470|GO:0004471
Ssu1g3257 630 PRINTS Malic enzyme signature 161 185 IPR001891 GO:0004470|GO:0004471
Ssu1g3257 630 PRINTS Malic enzyme signature 373 389 IPR001891 GO:0004470|GO:0004471
Ssu1g3257 630 Pfam Malic enzyme, N-terminal domain 155 335 IPR012301 GO:0004471
Ssu1g3257 630 SMART malic_2 155 336 IPR012301 GO:0004471
Ssu1g3257 630 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 346 629 IPR036291 -
Ssu1g3257 630 CDD NAD_bind_1_malic_enz 346 624 - -
Ssu1g3257 630 Gene3D - 344 630 - -
Ssu1g3257 630 PANTHER MALIC ENZYME 30 630 - -
Ssu1g3257 630 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 69 345 IPR046346 -
Ssu1g3257 630 PANTHER MALIC ENZYME-RELATED 30 630 - -
Ssu1g3257 630 PIRSF ME 54 630 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3257 Ssu-Chr1 84811141 84816012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3257 K00029 - gmx:100801564 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3257 1 84811141 84816012 Ssu1g3257 1 84811141 84816012 ECH
Ssu5g3270 5 81850263 81855840 Ssu1g3257 1 84811141 84816012 ECH
Ssu4g3315 4 83453910 83459061 Ssu1g3257 1 84811141 84816012 ECH
Ssu8g0255 8 3760322 3765783 Ssu1g3257 1 84811141 84816012 ECH