Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3315 ATGCTCCTTCATGTGCAAGTCAGGTATAGGTGGGTCTCTGCTCCACAGAGGAACCGTTCTGCTCCTACGAGGGTGATGGAGAAAGAGATAAATGGCGAGTCCACGGTGGCCGACGTCGACGACCACGCCACCTGTGGCGGCGGCGTTCGGGATGTGTACGGCGAGGATAGGGCCACGGAGGATCGGCTTGTCACTCCGTGGAGCGTCTCTGTTGCTagTGGGTATACTTTGTTGAGAGATCCACACTTTAACAAAGGGTTGGCCTTCACTGAAGATGAGAGGGACGCTCACTACTTGCGTGGCCTTCTTCCCCCAACAGTTATTTCTCAAGAAACTCAGGTGAAGAAATTGATCCAACACATACGCCAGTATCAAGTTCCATTGCACAAGTACATGGCAATGATGGATCTTCAGGAGAGAAATGAAAGGCTGTTTTACAAGCTTCTACTTGATCATGTTGAGGAGTTACTCCCAGTTGTTTATACTCCAACTGTTGGTGAAGCGTGCCAGAAATATGGGAGCATCTTCATGCATCCTCAGGGTCTTTATATAAGTTTGAAGGAGAAAGGGAGGATTCTTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGACGGAGAGCGAATTCTGGGTCTTGGGGATCTTGGCTGTCagTGCTTGCCTATTACCATCGATGTGGGTACAAACAATGAGAAGTTGTTGAATGATGAATTATACATAGGGCTCAAGCATAGACGAGTAACTGGGCAGGAATATGCTGAACTTCTGCTTGAATTTATGAATGCAGTAAAGCAAAATTATGGTGAAAAAATCCTCGTTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGGTCAACACATCTTGTCTTTAATGATGACATTCAGGGAACAGCATCAGTGGTCCTTGCAGGACTAGTTGCAGCTCTGAAATTGGTTGGGGGAGACTTGACTGATCACAGGTTCTTATTCCTCGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAAAGGACAAATTCCCCACTGGATGAAGTGCGCAAGAACATTTGGTTGGTGGACTCGAAGGGTTTGATTGTGAGTTCCCGTAAAGAATCACTTCAACATTTTAAGAAGCCCTGGGCTCATGAACATGAACCTGTTAAGGAACTTGTAGATGTTATTAATCAAATTAAGCCAACAGTGTTAATTGGAACATCAGGACAAGGGAGAACTTTTACTAAGGAAGTGATTGAAGCTATGGCTTCCACTAATGAGAAATCTATCATTCTTGCTCTTTCCAACCCGACATCACAGTCAGAATGCACTGCTGAAGAAGCTTATACTTGGAGCCAGGGACGTGCCATTTTTGCTAGTGGGAGCCCGTTTGCCCCGGTTGAATATGATGGAAAAGTGTTTGTGCCTGGCCAGGCTAATAATGCATACATATTTCCTGGATTTGGTCTTGGTTTAATAATGTCTGGGACCATTCGAGTGCATGATGACCTGCTTCTGGCAGCTTCTGAGGCTTTGGCTTCACAGGTGACCCAGGAGGACTATGACAAGGGGCTCATATACCCACCATTCACTAACATAAGAAAGATTTCAGCACACATAGCTGCCAATGTGGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTCGCCTTCCTCAACCAAAAGATTTGGTGAGGTTTGCTGAGAGCTCTATGTATACACCAGCCTATAGAAGCTACCGGTGA 1776 0.4538 MLLHVQVRYRWVSAPQRNRSAPTRVMEKEINGESTVADVDDHATCGGGVRDVYGEDRATEDRLVTPWSVSVASGYTLLRDPHFNKGLAFTEDERDAHYLRGLLPPTVISQETQVKKLIQHIRQYQVPLHKYMAMMDLQERNERLFYKLLLDHVEELLPVVYTPTVGEACQKYGSIFMHPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQCLPITIDVGTNNEKLLNDELYIGLKHRRVTGQEYAELLLEFMNAVKQNYGEKILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGDLTDHRFLFLGAGEAGTGIAELIALETSKRTNSPLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKELVDVINQIKPTVLIGTSGQGRTFTKEVIEAMASTNEKSIILALSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQEDYDKGLIYPPFTNIRKISAHIAANVAAKAYELGLATRLPQPKDLVRFAESSMYTPAYRSYR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3315 591 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 43 591 - -
Ssu4g3315 591 SMART malic_2 138 297 IPR012301 GO:0004471
Ssu4g3315 591 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 307 590 IPR036291 -
Ssu4g3315 591 ProSitePatterns Malic enzymes signature. 303 319 IPR015884 GO:0004471
Ssu4g3315 591 SMART Malic_M_2 307 560 IPR012302 GO:0051287
Ssu4g3315 591 Pfam Malic enzyme, NAD binding domain 307 559 IPR012302 GO:0051287
Ssu4g3315 591 Pfam Malic enzyme, N-terminal domain 138 224 IPR012301 GO:0004471
Ssu4g3315 591 Gene3D - 225 304 IPR037062 GO:0004471
Ssu4g3315 591 Gene3D - 72 224 IPR037062 GO:0004471
Ssu4g3315 591 Gene3D - 305 591 - -
Ssu4g3315 591 PANTHER MALIC ENZYME-RELATED 43 591 - -
Ssu4g3315 591 PRINTS Malic enzyme signature 437 453 IPR001891 GO:0004470|GO:0004471
Ssu4g3315 591 PRINTS Malic enzyme signature 144 168 IPR001891 GO:0004470|GO:0004471
Ssu4g3315 591 PRINTS Malic enzyme signature 204 233 IPR001891 GO:0004470|GO:0004471
Ssu4g3315 591 CDD NAD_bind_1_malic_enz 307 585 - -
Ssu4g3315 591 PIRSF ME 223 591 IPR001891 GO:0004470|GO:0004471
Ssu4g3315 591 PIRSF ME 50 225 IPR001891 GO:0004470|GO:0004471
Ssu4g3315 591 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 52 306 IPR046346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3315 Ssu-Chr4 83453910 83459061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3315 K00029 - gmx:100785718 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3315 4 83453910 83459061 Ssu8g0255 8 3760322 3765783 ECH
Ssu5g3270 5 81850263 81855840 Ssu4g3315 4 83453910 83459061 ECH
Ssu4g3315 4 83453910 83459061 Ssu4g3315 4 83453910 83459061 ECH
Ssu4g3315 4 83453910 83459061 Ssu1g3257 1 84811141 84816012 ECH
Ssu8g0255 8 3760322 3765783 Ssu4g3315 4 83453910 83459061 PCT