Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3270 ATGGTTTCACTGAACATAACGGGACACGGGTACTCAATCAACTTGGCAATTTCTGGCTGCTGTGGTAGTTCACAGAGGAAAATATCAGAGAAAGTGGTGTTGTGTCTAGGTTCAAAGGATCATCATCACAATATTCACATCACCggtgaagaagaaggagaagagaagaaagtaaTTGGCAGGAAGATGGAGAGCACATTGAAGGCCTTGAGAGATGGGGAGTCAGTGTTGGACCTCAGCCCAAGATCCACCGTCAGCGGCGGCGTTGAGGACATCTACGGTGAGGATCGCGCCACCGAGGACCAACTTGTCACCCCATGGACTTTCTCCGTTGCCAGTGGGTACTCTTTGCTAAGGGATCCACAGTACAACAAAGGGCTAGCTTTCACTGAGAAAGAGAGGGATGCACACTATTTGCGAGGGCTTCTGCCTCCCACAGTCAGCTCTCAGCAACTTCAGGAGAAGAAACTGATGAACAGCATCAGGCACTATCAGGTTCCCTTGCAAAAGTACATGGCCATGATGGACCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAACTTCTCATTGATAATGTTGAGGAATTGCTCCCAGTTGTATATACTCCTACAGTTGGTGAGGCTTGCCAGAAATATGGAAGCATATTCAGGCGTCCTCAGGGTCTTTACAttagtttgaaagaaaaGGGGAAAATACTTGAGGTTTTGAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTCGTAACTGATGGTGAGCGGATTTTGGGACTTGGGGATCTTGGTTGTCAGGGGATGGGAATTCCTGTTGGTAAATTGGCTTTGTACACAGCACTAGGAGGAGTTCGTCCTTCAGCATGTTTGCCTGTTACTATCGATGTGGGGACAAATAATGAGCAATTACTGAATGATGAATTTTACATTGGGCTTAGACAAAAGAGGGCAACTGGGCAGCAATATTATGAACTCCTGCATGAGTTCATGACTGCTGTGAAGCAAAACTATGGGGAAAAAGTTCTTGTACAGTTTGAAGACTTTGCAAATCACAATGCTTTTGAGTTGCTTGCAAAATATGGTACTACTCATCTCGTTTTCAATGATGATATACAGgGGACTGCATCTGTTGTTCTAGCTGGTGTTGTAGCAGCCCTGAAGCTCATTGGTGGTACCTTAGCTGAGCACACATTCCTCTTCCTTGGTGCTGGAGAAGCGGGGACTGGTATAGCAGAGCTAATAGCTCTTGAGATGTCAAAGCAGACTAAGGTACCTATAGAAGAGAGTCGCAAGAAGATATGGCTTGTAGATTCAAAGGGTTTAATTGTTAGTTCGCGGAAGAATTCACTTCAACATTTCAAGAAACCTTGGGCTCATGAACATGAGCCTGTAAACAGTCTCCTAGAAGCTGTTAAGGTGATCAAGCCTACAGTTTTGATTGGATCATCAGGAGTGGGAAGAACATTTACAAAGGAAGTAGTTGAGGCTATGGCTTCTAACAATGATAAACCTCTCATTTTGGCTCTCTCCAATCCTACCTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACCAGTGGAGTGAGGGCCGTGCAATTTTTGCTAGTGGGAGTCCATTTGATCCTGTTGAATACAAGGGCAAAGTTTATGCTTCTGGCCAGGCCAACAATGCTTACATTTTCCCAGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCAATTCGAGTACATGACGATATGCTTCTAGCAGCCTCGGAAGCCTTGGCTAAACAAGTGAGCGAGGAGAACTACAAAAATGGCTTGATTTACCCACCATTCTCTAGTATCAGAAAAATCTCGGCTAATATAGCTGCAAATGTTGCTGCCAAGGCATACGAACTAGGCTTGGCTACCCATCTTCCTCGACCTCAGAATCTTGTGAAGTATGCTGAGAGTTGCATGTATACCCCTGTATACCGCAACTATAGGTGA 1962 0.4409 MVSLNITGHGYSINLAISGCCGSSQRKISEKVVLCLGSKDHHHNIHITGEEEGEEKKVIGRKMESTLKALRDGESVLDLSPRSTVSGGVEDIYGEDRATEDQLVTPWTFSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTVSSQQLQEKKLMNSIRHYQVPLQKYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPVTIDVGTNNEQLLNDEFYIGLRQKRATGQQYYELLHEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHTFLFLGAGEAGTGIAELIALEMSKQTKVPIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHEPVNSLLEAVKVIKPTVLIGSSGVGRTFTKEVVEAMASNNDKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKVYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVSEENYKNGLIYPPFSSIRKISANIAANVAAKAYELGLATHLPRPQNLVKYAESCMYTPVYRNYR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3270 653 Gene3D - 112 366 IPR037062 GO:0004471
Ssu5g3270 653 CDD NAD_bind_1_malic_enz 369 647 - -
Ssu5g3270 653 PANTHER MALIC ENZYME-RELATED 51 653 - -
Ssu5g3270 653 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 369 652 IPR036291 -
Ssu5g3270 653 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 91 368 IPR046346 -
Ssu5g3270 653 PRINTS Malic enzyme signature 340 358 IPR001891 GO:0004470|GO:0004471
Ssu5g3270 653 PRINTS Malic enzyme signature 280 302 IPR001891 GO:0004470|GO:0004471
Ssu5g3270 653 PRINTS Malic enzyme signature 184 208 IPR001891 GO:0004470|GO:0004471
Ssu5g3270 653 PRINTS Malic enzyme signature 365 381 IPR001891 GO:0004470|GO:0004471
Ssu5g3270 653 PRINTS Malic enzyme signature 499 515 IPR001891 GO:0004470|GO:0004471
Ssu5g3270 653 PRINTS Malic enzyme signature 244 273 IPR001891 GO:0004470|GO:0004471
Ssu5g3270 653 PRINTS Malic enzyme signature 396 412 IPR001891 GO:0004470|GO:0004471
Ssu5g3270 653 PANTHER MALIC ENZYME 51 653 - -
Ssu5g3270 653 Pfam Malic enzyme, N-terminal domain 178 358 IPR012301 GO:0004471
Ssu5g3270 653 Pfam Malic enzyme, NAD binding domain 369 621 IPR012302 GO:0051287
Ssu5g3270 653 SMART Malic_M_2 369 622 IPR012302 GO:0051287
Ssu5g3270 653 PIRSF ME 78 653 IPR001891 GO:0004470|GO:0004471
Ssu5g3270 653 SMART malic_2 178 359 IPR012301 GO:0004471
Ssu5g3270 653 Gene3D - 367 653 - -
Ssu5g3270 653 ProSitePatterns Malic enzymes signature. 365 381 IPR015884 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3270 Ssu-Chr5 81850263 81855840 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3270 K00029 - gmx:100782096 1156.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3270 5 81850263 81855840 Ssu4g3315 4 83453910 83459061 ECH
Ssu5g3270 5 81850263 81855840 Ssu8g0255 8 3760322 3765783 ECH
Ssu5g3270 5 81850263 81855840 Ssu1g3257 1 84811141 84816012 ECH
Ssu5g3270 5 81850263 81855840 Ssu5g3270 5 81850263 81855840 ECH