Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1827 ATGGATACCTTCCTGTTCACTTCTGAGTCGGTGAATGAGGGTCATCCCGACAAACTGTGTGATCAGATATCTGATGCAGTCCTTGATGCCTGCCTGGAGCAAGACCCTGAAAGCAAGGTTGCTTGTGAGAGTTGCACCAAGACCAACTTGGTCATGGTATTTGGAGAGATCACCACAAAAGCCAAGGTAGACTACGAGAAGATTGTGCGAGAAACGTGTCGTTCTGTAGGATTTGTGTCCAGTGAAGTTGGCCTTGATGCTGACAACTGCAAGGTATTGGTCTACCTTGAGCAGCAAAGTCCTGACATAGCCCAGGGAGTCCATGGCCACCTCACCAAGCGACCAGAAGACATAGGAGCTGGTGATCAGGGTCACATGTTTGGCTATGCCACAGATGAAACACCTGAGCTTATGCCTCTCAGCCATGTCCTTGCAACCAAGCTTGGTGCCCGGCTCACCGAAGTACGCAGGAATGGGACCTGTCCTTGGTTGAGACCTGATGGGAAAACTCAAGTCACTGTTGAGTATGCTAATGACCATGGTGCCGTGGTCCCAGTGCGTGTCCACACCGTTCTCATATCCACTCAGCATGATGAAACCGTTACCAATGATGAGATTGCTGCAGACCTGAAAGAGCATGTTATTAAGCCTGTTATTCCTGAGAAGTACTTGGATGAGGAGGCCATTTTCCATCTCAACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCATGGTGATGCAGGTCTCACAGGACGCAAAATCATTGTTGACACATATGGTGGTTGGGGAGCTCATGGTGGTGGGGCTTTCTCAGGAAAGGACCCTACCAAGGTGGACAGGAGTGGAGCCTATATTGCTAGACAGGCTGCCAAGAGTATTGTGGCCAACGGACTTGCCAGAAGGTGCATTGTGCAAATATCATATGCAATTGGTGTGCCTGAGCCATTATCAGTGTTTGCTGAAACTTTTGGCACTGGAAAGATTCCTGACAAGGAGATTCTGAAGCTTGTGAAGGAAAACTTTGATTTCAGGCCAGGGATGATTTCCATTAACTTGGACCTTAAGAGGGGTGGCAATGGCAGGTTCTTGAAAACTGCTGCTTATGGCCACTTTGGAAGAGATGACCCTGACTTCACATGGGAGGTGGTGAAGCCTCTAAAGTGGGAGGAGGGCCAGGAATAA 1182 0.4924 MDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACESCTKTNLVMVFGEITTKAKVDYEKIVRETCRSVGFVSSEVGLDADNCKVLVYLEQQSPDIAQGVHGHLTKRPEDIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRRNGTCPWLRPDGKTQVTVEYANDHGAVVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEEAIFHLNPSGRFVIGGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVANGLARRCIVQISYAIGVPEPLSVFAETFGTGKIPDKEILKLVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEEGQE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1827 393 CDD S-AdoMet_synt 5 384 - -
Ssu7g1827 393 ProSitePatterns S-adenosylmethionine synthase signature 2. 266 274 IPR022631 GO:0004478|GO:0006556
Ssu7g1827 393 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478|GO:0006556
Ssu7g1827 393 Gene3D - 4 242 - -
Ssu7g1827 393 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 1 392 - -
Ssu7g1827 393 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu7g1827 393 Pfam S-adenosylmethionine synthetase, C-terminal domain 240 381 IPR022630 GO:0004478|GO:0006556
Ssu7g1827 393 Pfam S-adenosylmethionine synthetase, central domain 117 238 IPR022629 GO:0004478|GO:0006556
Ssu7g1827 393 Hamap S-adenosylmethionine synthase [metK]. 2 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu7g1827 393 PIRSF MAT 1 391 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu7g1827 393 SUPERFAMILY S-adenosylmethionine synthetase 115 239 IPR022636 GO:0004478|GO:0006556
Ssu7g1827 393 Gene3D - 117 381 - -
Ssu7g1827 393 TIGRFAM metK: methionine adenosyltransferase 5 386 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu7g1827 393 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478|GO:0006556
Ssu7g1827 393 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478|GO:0006556
Ssu7g1827 393 Gene3D - 11 279 - -
Ssu7g1827 393 SUPERFAMILY S-adenosylmethionine synthetase 240 388 IPR022636 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1827 Ssu-Chr7 36905134 36906315 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1827 K00789 - gmx:100778809 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0536 4 8420218 8421402 Ssu7g1827 7 36905134 36906315 ECH
Ssu6g0479 6 7427353 7428531 Ssu7g1827 7 36905134 36906315 ECH
Ssu1g1696 1 41548378 41550546 Ssu7g1827 7 36905134 36906315 ECH
Ssu7g1827 7 36905134 36906315 Ssu7g1827 7 36905134 36906315 ECH