Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0479 ATGGCAGAGACTTTCCTATTTACCTCCGAGTCTGTGAACGAGGGACACCCTGACAAGCTCTGCGATCAAATCTCCGATGCTGTCCTCGACGCTTGCCTTGAGCAGGACCCAGACAGCAAGGTTGCCTGTGAGACGTGCACCAAAACCAACTTGGTTATGGTCTTCGGAGAGATCACCACCAAGGCCAACGTCGACTACGAGAAGATCGTGCGTGACACCTGCAGGAAAATTGGCTTCGTTTCAAACGATGTGGGACTTGATGCCGACAACTGTAAAGTCCTCGTTAACATTGAGCAGCAGAGCCCTGATATTGCTCAGGGTGTGCATGGCCACCTCACCAAAAGACCCGAAGAAATTGGTGCCGGTGACCAGGGTCACATGTTTGGGTACGCCACTGATGAGACCCCAGAATTGATGCCGTTGAGCCACGTTCTTGCGACCAAGCTCGGTGCTCGTCTCACCGAGGTTCGCAAGAACGGTACCTGCCCCTGGCTGAGGCCTGATGGCAAGACCCAAGTGACTGTTGAGTATTACAATGACAAGGGTGCCAGGGTTCCGGTTCGTGTCCACACTGTGCTTATCTCCACCCAACATGATGAGACTGTGACCAACGATGAAATTGCTGCTGACCTGAAGGAGCATGTGATCAAGCCTGTGATCCCCGAGAAGTACCTTGATGAGAAGACCATTTTCCACTTGAACCCCTCTGGCCGTTTTGTCATTGGTGGCCCCCATGGAGATGCTGGTCTCACTGGTAGGAAGATCATTATTGATACTTATGGTGGATGGGGTGCTCATGGTGGTGGTGCCTTCTCCGGGAAGGACCCTACCAAGGTTGACAGGAGTGGTGCTTACATTGTGAGACAGGCTGCTAAGAGCATTGTGGCCAGTGGACTTGCCAGGAGGTGCATTGTGCAGGTGTCCTATGCCATTGGGGTGCCTGAGCCTTTGTCTGTGTTTGTTGACACCTATGGCACTGGGAAGATCCCTGACAAGGAGATCCTCAACATTGTGAAGGAGAACTTTGATTTCAGGCCTGGCATGATTTCTATTAATCTTGATCTCAAGAGGGGTGGCAACAGCAGGTTCTTGAAGACTGCTGCTTATGGACACTTTGGCAGAGACGACCCTGACTTCACATGGGAAGTGGTCAAGCCCCTCAAATGGGAGAAGGCCTAA 1179 0.5208 MAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVDYEKIVRDTCRKIGFVSNDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDKGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILNIVKENFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0479 392 TIGRFAM metK: methionine adenosyltransferase 6 387 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu6g0479 392 Hamap S-adenosylmethionine synthase [metK]. 3 391 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu6g0479 392 SUPERFAMILY S-adenosylmethionine synthetase 116 240 IPR022636 GO:0004478|GO:0006556
Ssu6g0479 392 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu6g0479 392 SUPERFAMILY S-adenosylmethionine synthetase 241 389 IPR022636 GO:0004478|GO:0006556
Ssu6g0479 392 Pfam S-adenosylmethionine synthetase, central domain 118 239 IPR022629 GO:0004478|GO:0006556
Ssu6g0479 392 ProSitePatterns S-adenosylmethionine synthase signature 1. 120 130 IPR022631 GO:0004478|GO:0006556
Ssu6g0479 392 Pfam S-adenosylmethionine synthetase, C-terminal domain 241 382 IPR022630 GO:0004478|GO:0006556
Ssu6g0479 392 Gene3D - 5 243 - -
Ssu6g0479 392 ProSitePatterns S-adenosylmethionine synthase signature 2. 267 275 IPR022631 GO:0004478|GO:0006556
Ssu6g0479 392 Gene3D - 12 280 - -
Ssu6g0479 392 SUPERFAMILY S-adenosylmethionine synthetase 4 110 IPR022636 GO:0004478|GO:0006556
Ssu6g0479 392 Pfam S-adenosylmethionine synthetase, N-terminal domain 5 102 IPR022628 GO:0004478|GO:0006556
Ssu6g0479 392 CDD S-AdoMet_synt 6 385 - -
Ssu6g0479 392 PIRSF MAT 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu6g0479 392 Gene3D - 118 382 - -
Ssu6g0479 392 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 1 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0479 Ssu-Chr6 7427353 7428531 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0479 K00789 - gmx:100799139 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0479 6 7427353 7428531 Ssu6g0479 6 7427353 7428531 ECH
Ssu6g0479 6 7427353 7428531 Ssu4g0536 4 8420218 8421402 ECH
Ssu6g0479 6 7427353 7428531 Ssu7g1827 7 36905134 36906315 ECH
Ssu6g0479 6 7427353 7428531 Ssu7g1902 7 38112435 38113619 ECH