Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0536 ATGGCAGCAGAAACCTTTCTATTCACTTCTGAGTCTGTGAACGAGGGTCACCCCGACAAGCTGTGCGACCAGATCTCTGATGCAGTGCTTGATGCGTGCCTTGCACAGGATCCCGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGGGGAGATCACAACCAAGGCCAACGTAGACTATGAGAAGATTGTCCGCGACACATGCCGTAGCATTGGATTCATCTCTGATGATGTTGGTCTTGATGCTGACAAATGCAAGGTGTTGGTCAACATCGAGCAGCAGAGCCCTGATATCGCCCAGGGTGTGCACGGCCACTTCACCAAGCGCCCAGAGGAGGTTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCCACTGATGAAACCCCTGAATACATGCCCCTGAGCCATGTCCTTGCAACCAAACTAGGCGCTCGCCTCACCGAGGTTAGGAAGAACGGTACCTGCGCTTGGCTGAGGCCAGATGGCAAGACACAAGTAACTGTTGAGTACTACAATGACAAGGGTGCCATGGTTCCGGTTCGTGTCCACACTGTCCTCATTTCCACCCAACATGATGAGACTGTGAGCAATGACCAAATTGCTGCTGACCTTAAAGAGCATGTTATCAAGCCTGTCATTCCTGAGAAGTACTTAGATGAGAAGACCATCTTCCACCTTAACCCTTCTGGCCGTTTTGTCATTGGTGGCCCCCATGGTGATGCTGGTCTCACTGGAAGAAAGATCATCATTGATACCTATGGTGGCTGGGGTGCTCATGGTGGAGGTGCCTTTTCAGGCAAGGACCCTACTAAGGTTGACAGGAGTGGTGCCTATATTGTAAGGCAGGCTGCAAAGAGTGTTGTGGCAAATGGCCTTGCTAGAAGGTGCattgtccaagtttcttatgccattGGTGTCCCTGAGCCCTTGTCAGTCTTTGTTGACACTTATGGAACCGGGAAGATTCCTGACAAGGAGATTCTTCAGATTGTGAAGGAGAATTTCGACTTCAGACCTGGAATGATCACCATTAACTTGGACCTTAAGAGGGGTGGCCATAGGTTCCTCAAGACAGCTGCTTATGGACACTTCGGAAGGGATGACCCAGACTTCACCTGGGAAGTTGTGAAGCCACTCAAGTCGGAGAAGCCTCAGGCTTAA 1185 0.5004 MAAETFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDKGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKENFDFRPGMITINLDLKRGGHRFLKTAAYGHFGRDDPDFTWEVVKPLKSEKPQA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0536 394 Gene3D - 6 244 - -
Ssu4g0536 394 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 4 4 394 - -
Ssu4g0536 394 ProSitePatterns S-adenosylmethionine synthase signature 1. 121 131 IPR022631 GO:0004478|GO:0006556
Ssu4g0536 394 Gene3D - 119 382 - -
Ssu4g0536 394 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 4 394 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu4g0536 394 Pfam S-adenosylmethionine synthetase, central domain 119 240 IPR022629 GO:0004478|GO:0006556
Ssu4g0536 394 PIRSF MAT 1 394 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu4g0536 394 CDD S-AdoMet_synt 7 385 - -
Ssu4g0536 394 SUPERFAMILY S-adenosylmethionine synthetase 242 389 IPR022636 GO:0004478|GO:0006556
Ssu4g0536 394 Pfam S-adenosylmethionine synthetase, C-terminal domain 242 382 IPR022630 GO:0004478|GO:0006556
Ssu4g0536 394 SUPERFAMILY S-adenosylmethionine synthetase 5 111 IPR022636 GO:0004478|GO:0006556
Ssu4g0536 394 SUPERFAMILY S-adenosylmethionine synthetase 117 241 IPR022636 GO:0004478|GO:0006556
Ssu4g0536 394 Hamap S-adenosylmethionine synthase [metK]. 4 394 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu4g0536 394 TIGRFAM metK: methionine adenosyltransferase 7 388 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu4g0536 394 ProSitePatterns S-adenosylmethionine synthase signature 2. 268 276 IPR022631 GO:0004478|GO:0006556
Ssu4g0536 394 Gene3D - 13 281 - -
Ssu4g0536 394 Pfam S-adenosylmethionine synthetase, N-terminal domain 6 103 IPR022628 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0536 Ssu-Chr4 8420218 8421402 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0536 K00789 - gmx:100777770 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0536 4 8420218 8421402 Ssu7g1827 7 36905134 36906315 ECH
Ssu6g0479 6 7427353 7428531 Ssu4g0536 4 8420218 8421402 ECH
Ssu1g1696 1 41548378 41550546 Ssu4g0536 4 8420218 8421402 ECH
Ssu4g0536 4 8420218 8421402 Ssu4g0536 4 8420218 8421402 ECH
Ssu4g0536 4 8420218 8421402 Ssu7g1902 7 38112435 38113619 PCT