Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2983 ATGGACGACGCGTTTCGCTTCCCTTCCGAGTTCCCCTACGAGTTCGACTCTGTAGCGACCGAGCCGGTCGAGTGCGGTTCGACCGGGACCGAGAGCAGCGACGAGGAGGACTTCTTCGCCGGGTTGACTCGCCGACTGAGTCATGCCTCGCTCCACGAAACCCGGAAGGAGCAACTCACTTTTCCCATCTGCAACAGTGACAATTCTGAGAGTCAGAAGACGGCTCGTGGTTTGGCCGGGTCGCCACAGTCTATACTGAGCGGAATCGGGAGCTGGTCCGGTCGGAGCGGCGAGTCCGGCGACGGAAGCCCGAACGGGTCTTCTCGCGTTCCGTCGCCGACGACGACGCCGTTTAAGGGCACAAACGACGCGTGGTATGTGTTATACGCGGCCGCAGGGGAAGTTGCGAGGCTGAAGATGAACGACGAGGCTTCTTCGAAGTTCGATTTTCAGAACAGAGGTGTACTTGGTGGTCTTCCTCCACCTGTTGTGGCGGAGAATGCGTTTTTCGCGAACCGGGGGGTTTCTCAGGTTCGGTATCAGGTGAGGCCGGAGCAGGTGTTGAAGCAGCAGTGCGGTTCGGTTTGGGGGAGGCAAGGGAAGACTAGTTGGGTAACTCAGCAGCACCAACCACAGATTCAGAATAGAGTGCGTGATTTGCGTGAGTTTGGGTATGAATATGAAGGTGTGAAATGTGTGCGTCCTTTGCCTCATTCTGCATGGCACCCTCTTCAAGTTAAGCACCAGAATCAGCAGGTGCCACATTTCGGATCCGGGTTGCAACCTGGATCTGGGGCTAAAAGGGGCTGCGGCGGAACTGGGGTTTTCTTGCCTCGTCAATATGGGACCCCTCCTCCTGAATCTCGCAAGAAAACAAGTTGCGCTGCACCTGTTTTGGTCCCGGCTAAGGTTATTCACGCTCTGAACCTGAACATTGATGACCTGAATGCCGCTGGCCAACCGCGCTTTTCAAGTGCTTTTGGCGTGGACTATGatgcTTTGTTAGCCAGAAGAAATGCTCTTCTCTTGCAGCAGAAGTTCAGCATGCGGCGAGAAGAGGCAGCAAACTATGAACTTCGCTTGCCACAGGAATGGACGTACTGA 1104 0.5534 MDDAFRFPSEFPYEFDSVATEPVECGSTGTESSDEEDFFAGLTRRLSHASLHETRKEQLTFPICNSDNSESQKTARGLAGSPQSILSGIGSWSGRSGESGDGSPNGSSRVPSPTTTPFKGTNDAWYVLYAAAGEVARLKMNDEASSKFDFQNRGVLGGLPPPVVAENAFFANRGVSQVRYQVRPEQVLKQQCGSVWGRQGKTSWVTQQHQPQIQNRVRDLREFGYEYEGVKCVRPLPHSAWHPLQVKHQNQQVPHFGSGLQPGSGAKRGCGGTGVFLPRQYGTPPPESRKKTSCAAPVLVPAKVIHALNLNIDDLNAAGQPRFSSAFGVDYDALLARRNALLLQQKFSMRREEAANYELRLPQEWTY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2983 367 MobiDBLite consensus disorder prediction 64 117 - -
Ssu6g2983 367 PANTHER TIP41-LIKE PROTEIN 2 367 - -
Ssu6g2983 367 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1-LIKE 2 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2983 Ssu-Chr6 68576755 68578253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2983 - - gmx:100816574 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2983 6 68576755 68578253 Ssu4g2234 4 53058731 53065118 ECH
Ssu3g1221 3 29719306 29720814 Ssu6g2983 6 68576755 68578253 ECH
Ssu6g2983 6 68576755 68578253 Ssu6g2983 6 68576755 68578253 ECH
Ssu9g1541 9 51467674 51469175 Ssu6g2983 6 68576755 68578253 PCT