Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0445 ATGCCAAACATGTACAAGTTAGAAAAGAACCAAAGAGATGACAACATGTTACTAACCCCTTCCTTCTCTTCCACCCTCCTCGACCAGATTTACCGTTCCATCGACGAGGGCGAGAGAAAAAGCGGCGAAACGAAGTTCTACAGACACACCACAATGAGCACCGCTAAGAAACAGAGCCGAAGCAATTCGAAGTCGGTAGAAACGGATAGAAAAATTGTCGGCGCGAAAACGGACAGAAAACTGCGCCGTGCTGACGTGGACCGCGACCAAGACGTTCTCTTCTTCAGCTCCACTTCCATTTCCTCGGATTCCAGTTTCGGATTCTCCTCCTCCGACACGGAGTCCCACCCGCGCGCCTCGTGTTTCGCGCCGCGGCCGAAGCCCGTGCGGGCCAGCGCGTCGTTCAGGTCGGAGAAACAGGGAATGCGCGTGTTCGAGGGTTTGTGTCGGAACTCCAGCACTTCGGAAGAACACGTGTCCAAATCGAGGGCGCTGAAGATTtacaacaacctcaagaaggtGAAACAACCGATTTCTCCCGGTGGCAGGGTCACGAGTTTCCTCAACTCGCTTTTCGCCAACGCGACGAAGAAAACTAGTTCCCGCACGTGCGGCGAAGTGCAagctgcttcttcttcttcttcttcttactcTTCCACTTCCACGTGTTCCTCTGCGGCTTCGTTGTCAAGGTCTTGCTTGAGCAAGACCTTGACTTCCGAGAGGGACACGTTGCGCAACGGGGTGAAGCGAACGGTGCGGTTTTACCCCGTGAGTGTGATCGTGGGTGAGGATAGTCGACCCTGCGGGCACAAACGCTTGTGCGAAGAAAAAGAAGCTTCTAGAGAGTTCTTAAGAGAGTACCGACACGACCAGAAGAAGAGCAATGACTTGGTTTTGAAGGACTTGTCTTTAAGAACTAAAGTAGATGTTGGTGACGGTGATGACGACGACGATGATGCATCGAGTTATGCGAGTTCGGATCTCTTCGAGCTCGATCATTTGGCTGTGTTTGGAAGTGGAAGGTATAGTGAGGAGCTTCCAGTGTACGAAACTACTCATGTTAGTACTAACCGCGCCATTGCCAATGGCCTCATAGTGTAA 1104 0.4991 MPNMYKLEKNQRDDNMLLTPSFSSTLLDQIYRSIDEGERKSGETKFYRHTTMSTAKKQSRSNSKSVETDRKIVGAKTDRKLRRADVDRDQDVLFFSSTSISSDSSFGFSSSDTESHPRASCFAPRPKPVRASASFRSEKQGMRVFEGLCRNSSTSEEHVSKSRALKIYNNLKKVKQPISPGGRVTSFLNSLFANATKKTSSRTCGEVQAASSSSSSYSSTSTCSSAASLSRSCLSKTLTSERDTLRNGVKRTVRFYPVSVIVGEDSRPCGHKRLCEEKEASREFLREYRHDQKKSNDLVLKDLSLRTKVDVGDGDDDDDDASSYASSDLFELDHLAVFGSGRYSEELPVYETTHVSTNRAIANGLIV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0445 367 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 4 71 IPR039621 GO:0009734
Ssu5g0445 367 MobiDBLite consensus disorder prediction 106 126 - -
Ssu5g0445 367 PANTHER PROTEIN BIG GRAIN 1-LIKE B 4 71 - -
Ssu5g0445 367 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 83 367 IPR039621 GO:0009734
Ssu5g0445 367 PANTHER PROTEIN BIG GRAIN 1-LIKE B 83 367 - -
Ssu5g0445 367 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0445 Ssu-Chr5 9248037 9249140 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0445 - - var:108337614 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0445 5 9248037 9249140 Ssu5g0445 5 9248037 9249140 ECH
Ssu1g3597 1 91350960 91352138 Ssu5g0445 5 9248037 9249140 ECH
Ssu6g0609 6 9604456 9605643 Ssu5g0445 5 9248037 9249140 ECH
Ssu4g3158 4 80027266 80028084 Ssu5g0445 5 9248037 9249140 ECH