Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3597 ATGCACGGCTTCCTAAACGACGCTAAAAACCCCTCCTTCTCTTCCAGCCTCCTCGACAAAATCTACCGCTCCATCGACGAAGGAGAGAGGAAGAGCAACAACGACATGAAGTTCCACAACGAAACAATGGTGAACAAGAAACAGAGCAGAGCCACCGAAGAAGAGTTAACCGCGGCGAGTATTCGCCGCGCTTGTTTGCTCGAAAAATGGAAAGCAAGCGAAAAAACGGTGAAAACGCAAATGGAGAGAAAATCGCGTCGGCAGCATCACGATCACGACCAGGAGGTTATGTTCTTCAGTTCAACTTCGAGTTCCTCGGAATCCAGTTCAGGGTTATTGTCGTCCTCCGACACGGAGTCCTTGTACGGAGTGAGATCGAGATCGCGAGTTTCTTGTTTTGCCCCGTCGAGGCCCAAACATGCAACGATGACGTCAGAGAAGGCACGCGCTGCGAGTAATGATGATGTTTTAATCAAGTCAAAATCGAGGGCGTTGAAGATTTACAACAATCTCAAGAAGGTGAAGCAACCCATCTCTCCCGGGGGGAGGCTCAGTAGTTTTCTTAACTCTCTGTTCGCGTCAGGGAACGCAAAGAAGACCAAAACCTACGACGAAGCGAACGCTGAGAGAAAAGTCAAGTCCGGACAAGAAGACTCCACGTGTTCCTCCGCGTCGTCGTTCTCACGCTCTTGTTTAAGCAAGGCTCCACCTTCCTCTAACAACAAGTTGCGCGACGGGGTTAAGCGAACGGTGCGTTTTTACCCCGTGAGTGTGATCGTGGACGAAGATTGTCGACCCTGTGGGCATAAGTGCTTGTATGAAGAGGACACGCGCGTGATGGCCGTGTCCGTGCCAACCGCGTGGAAAATTGGGCGCAAGAAGAacgaggaggaagaagaaaaggttgtggATAAGAGCAGGCGCGTGGAGGAGGCTGCCAGAGAGTTCTTGAAAGAGTACCATCGAAGCCAGAAGAAGAGCGATTTGATTTTGAGGGATTTTCCTAATgaggaagatgatgatgatgatgatgatgatgcagCGAGTTATTCAAGTTCGGATCTGTTCGAGCTTGATCACCTATCGGTGATAGGAAATAATAGGTATCGTGAGGAGCTTCCGGTGTACGAGACTACTCATGTTAGTACTAATCGCGCCATTGCTAATGGCCTCATATAA 1179 0.4724 MHGFLNDAKNPSFSSSLLDKIYRSIDEGERKSNNDMKFHNETMVNKKQSRATEEELTAASIRRACLLEKWKASEKTVKTQMERKSRRQHHDHDQEVMFFSSTSSSSESSSGLLSSSDTESLYGVRSRSRVSCFAPSRPKHATMTSEKARAASNDDVLIKSKSRALKIYNNLKKVKQPISPGGRLSSFLNSLFASGNAKKTKTYDEANAERKVKSGQEDSTCSSASSFSRSCLSKAPPSSNNKLRDGVKRTVRFYPVSVIVDEDCRPCGHKCLYEEDTRVMAVSVPTAWKIGRKKNEEEEEKVVDKSRRVEEAAREFLKEYHRSQKKSDLILRDFPNEEDDDDDDDDAASYSSSDLFELDHLSVIGNNRYREELPVYETTHVSTNRAIANGLI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3597 392 MobiDBLite consensus disorder prediction 329 350 - -
Ssu1g3597 392 MobiDBLite consensus disorder prediction 202 216 - -
Ssu1g3597 392 MobiDBLite consensus disorder prediction 28 55 - -
Ssu1g3597 392 MobiDBLite consensus disorder prediction 77 118 - -
Ssu1g3597 392 MobiDBLite consensus disorder prediction 217 244 - -
Ssu1g3597 392 PANTHER PROTEIN BIG GRAIN 1-LIKE B 6 392 - -
Ssu1g3597 392 Coils Coil 295 315 - -
Ssu1g3597 392 MobiDBLite consensus disorder prediction 77 96 - -
Ssu1g3597 392 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 6 392 IPR039621 GO:0009734
Ssu1g3597 392 MobiDBLite consensus disorder prediction 202 244 - -
Ssu1g3597 392 MobiDBLite consensus disorder prediction 334 350 - -
Ssu1g3597 392 MobiDBLite consensus disorder prediction 97 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3597 Ssu-Chr1 91350960 91352138 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3597 - - gmx:100802581 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3597 1 91350960 91352138 Ssu1g3597 1 91350960 91352138 ECH
Ssu1g3597 1 91350960 91352138 Ssu5g0445 5 9248037 9249140 ECH
Ssu6g0609 6 9604456 9605643 Ssu1g3597 1 91350960 91352138 ECH
Ssu4g3158 4 80027266 80028084 Ssu1g3597 1 91350960 91352138 ECH