Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3073 ATGCTTCTCCGAACCGCCGCTGCTTCGGCTTGCTCCCTCTCCCTCTTCAAACCGAACGCCGAACCTTCGCGTTCGGTTCCCGCTCGTGGATTGGTGGTCTGCGCCGCGAAAGGATCCTCCAATAACCGCGCCCTAACGGGCGTTATTTTTGAACCGTTTGAAGAGGTGAAGAAAGAGCTCGATCTCGTTCCCACCGCTCCACAAGCTTCTCTCGCACGCCAAAAATACGTTGACGTATCTGAAGCTGCCGTTAACGAACAAATCAAGttgcttctctctctctctctctctctctcatcggTTTTACTTTGTCATTTTCTCGttgttattctcttttttttcggATGCAGTGTGGAGTACAATGTTTCGTACGTTTACCATGCTATGTTTGCGTACTTCGATAGGGACAACGTTGCGCTAAGAGGTCTTGCCAAGTTTTTTAAGGAGTCGAGTGAAGAGGAAAGAGAGCATGCTGAGAAATTGATGGAGTATCAGAACAAGCGTGGTGGAAGAGTGAAGTTGCAGTCGATTGTGATGCCGCTTTCTGAGTTTGATCATGCAGATAAGGGAGATGCGCTGCACGCAATGGAACTCGCTCTGTCACTAGAGAAGCTAACGAACGAAAAGCTCCTTAACTTGCACGGTGTTGCCATGAAGAACTGTGATGTGCAGTTGGCTGACTTTGTGGAAAGTGAGTTTCTGGGTGAACAGGTGGAAGCCATCAAAAGAATATCCGAGTATGTTGCTCAGCTCAGAAGAGTTGGCAAAGGACAtgGTGTTTGGCACTTTGATCAGACGCTGCTCCACGAGCGCGGAGATGCAGCTTGA 828 0.4589 MLLRTAAASACSLSLFKPNAEPSRSVPARGLVVCAAKGSSNNRALTGVIFEPFEEVKKELDLVPTAPQASLARQKYVDVSEAAVNEQIKLLLSLSLSLSSVLLCHFLVVILFFFGCSVEYNVSYVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGRVKLQSIVMPLSEFDHADKGDALHAMELALSLEKLTNEKLLNLHGVAMKNCDVQLADFVESEFLGEQVEAIKRISEYVAQLRRVGKGHGVWHFDQTLLHERGDAA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3073 275 PANTHER FERRITIN 117 270 - -
Ssu6g3073 275 Coils Coil 147 168 - -
Ssu6g3073 275 Gene3D - 42 271 IPR012347 -
Ssu6g3073 275 ProSitePatterns Ferritin iron-binding regions signature 2. 222 242 IPR014034 -
Ssu6g3073 275 CDD Euk_Ferritin 78 265 - -
Ssu6g3073 275 PANTHER FERRITIN 8 93 - -
Ssu6g3073 275 PANTHER FERRITIN 117 270 IPR001519 GO:0006826|GO:0006879|GO:0008199
Ssu6g3073 275 ProSitePatterns Ferritin iron-binding regions signature 1. 153 171 IPR014034 -
Ssu6g3073 275 SUPERFAMILY Ferritin-like 117 268 IPR009078 -
Ssu6g3073 275 PANTHER FERRITIN 8 93 IPR001519 GO:0006826|GO:0006879|GO:0008199
Ssu6g3073 275 Pfam Ferritin-like domain 118 254 IPR008331 GO:0008199
Ssu6g3073 275 ProSiteProfiles Ferritin-like diiron domain profile. 102 255 IPR009040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3073 Ssu-Chr6 70160687 70162962 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3073 K00522 - gmx:547477 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3073 6 70160687 70162962 Ssu4g2422 4 60438472 60507079 ECH
Ssu6g3073 6 70160687 70162962 Ssu6g3073 6 70160687 70162962 ECH
Ssu9g1626 9 52922676 52924542 Ssu6g3073 6 70160687 70162962 PCT