Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1057 ATGGCTCTTGCACTGTCCAAAGTTTCCCCCTTTTCTGGGTTATCTCTCTCGACCAATGTTGGGGATGCTGCGAGAAACCCTTCTTCTTTGAGCTTTGCTAATAAGAAACTGGGAAGCAGAAACCTCGCGGTTTGTGCCTCAACTGCGCCTCTCACTGGGGTGATATTCGAACCGTTTGAGGAGGTCAAGAAGGGTGAGCTTGCTGTTCCAACTGCTCCCCATGTTTCGTTGGCTCGCCAGAACTATGCTGATGAGTGTGAGTCTGCAATTAACGAGCAGATAAATGTGGAATACAATGCTTCCTATGTGTACCACTCCTTGTTTGCATACTTTGACAGGGACAACGTGGCTCTCAAGGGATTTGCCAGGTTCTTCAAGGAATCtagtgaagaagaaagagatcaTGCTGAAAAGCTTATGAAATATCAGaACGTTCGTGGTGGAAGAGTTGTTCTTCACCCCATCAAGAATGTGCCCTCCGAATTTGAGCATGTGGAAATGGGGGATGCATTGTATGCAATGGAATTATCTTTGTCTTTGGAGAAGTTAGTAAATGAGAAACTTCTGAGGGCTCATAGTGTGGCAGACCGGAACAATGACCCTCAAATGGCAGACTTCATTGAAAGCGAGTTTTTATCTGAACAGGTTGAAGCAATTAAGAAGATATCAGAGTATGTGGCTCAATTGAGAAGGGTTGGAAAGGGTCACGGTGTTTGGCACTTTGATCAAAGCCTTCTTCACGAGGAAGATGCTGCTTGA 759 0.444 MALALSKVSPFSGLSLSTNVGDAARNPSSLSFANKKLGSRNLAVCASTAPLTGVIFEPFEEVKKGELAVPTAPHVSLARQNYADECESAINEQINVEYNASYVYHSLFAYFDRDNVALKGFARFFKESSEEERDHAEKLMKYQNVRGGRVVLHPIKNVPSEFEHVEMGDALYAMELSLSLEKLVNEKLLRAHSVADRNNDPQMADFIESEFLSEQVEAIKKISEYVAQLRRVGKGHGVWHFDQSLLHEEDAA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1057 252 PANTHER FERRITIN-1, CHLOROPLASTIC 1 247 - -
Ssu3g1057 252 SUPERFAMILY Ferritin-like 71 247 IPR009078 -
Ssu3g1057 252 CDD Euk_Ferritin 84 243 - -
Ssu3g1057 252 PANTHER FERRITIN 1 247 IPR001519 GO:0006826|GO:0006879|GO:0008199
Ssu3g1057 252 ProSitePatterns Ferritin iron-binding regions signature 2. 200 220 IPR014034 -
Ssu3g1057 252 ProSiteProfiles Ferritin-like diiron domain profile. 80 233 IPR009040 -
Ssu3g1057 252 Pfam Ferritin-like domain 88 232 IPR008331 GO:0008199
Ssu3g1057 252 Gene3D - 49 250 IPR012347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1057 Ssu-Chr3 24766718 24769363 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1057 K00522 - gmx:547824 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1057 3 24766718 24769363 Ssu3g1057 3 24766718 24769363 ECH
Ssu3g1057 3 24766718 24769363 Ssu6g2688 6 62487329 62489657 ECH
Ssu3g1057 3 24766718 24769363 Ssu4g2422 4 60438472 60507079 PCT