Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00489 ATGCCTACGCCGGTGGCAGCAGCGAGACAATGCCTGACGGAGGAGGCCGCAAAGGGGCTCGACGACGCCGTATCGGTGGCCCGGAGGCGCGGCCACGCGCAGACCACTTCACTGCACGCCGTCTCCGCCATGCTCTCCCACACGTCCTCCGCACTGCGCGACGCATGTGCACGCTCCCGAAGCGCGGTGCACTCGACGCGCCTTCAATTCAGAGCCCTCGAACTCTCCCTCAGCGTGTCACTCGACCGCTCGCTGTCAAAATCTTGCGGCGGCGACGATCCGCCGGTGTCGAATTCGCTCATGGCCGCCATCAAGCGGTCGCAAGCCACCCAGCGCCGCAAGCCGGAGAACTTTCCCCTCCAGCAACCTTGTTCCGTTAAGGTGGACCTGCATCACCTGATCCTGTCCATCCTCGACGACCCCGTCGTGAGTCGCGTCTTCGCCGAAGCAGGTTTCTGGAGCTCCGAAATCAAACTCGCCATCCTCCGTCCCCTCACGCACCTCATGCACCAACAACTTCCTCTTCGCCGGAACTTCCCCTTCGCTTTCTCTGGCGAGGAGGACGCCGATAATCGGAGGATCGCGGAGGTGCTATCCCGGAAGAGTGGCAGAAATCCCTTGCTTCTGGGTGCATGTGCACGTGATGCGCTGCGGAGTTTCGTGGAAGCGGTGGAGCGGCAAAACAGCGCCGTTTTGGCAGGGGAGTTGTGCAGTTTGCGCGTGACGCGTATTGGAAGAGAGGCTATGGAGTTTGTTGGCGGGAGTTGCGGGGAAGAGGTTGTCAGTGGGAGGTTTGAAGAGATTGGTGAAATGGTGGAGCAGCGCGTGGGGAAAGGTGTAGTGGTTGATTTGGGAGAGTTGGAGGATTTGGTGAATGAGAAAAACGGGTGGGGTGAGAGTGAGGCAGTTAGGTATGTGGTTATAGGGTTAGGAAAGTTGTTGGAAGTTAGTTACGGAAGGTTATGGTTGATTGCTGCTGCGGGCAGTTATGAAATATATATGAAATTTGTGGGGAGGTTTTCTTCTATAGAGAAGGATTGGGACTTGCAGCTTCTGCCCATTGTCTCTATTCGCTCTTCTTTTTCTGCTCAAGCATATCACACTCCCAGGTGTGAGTCAAGTATGCTCGCTGCTTCAACTGTTGGTCTATGCCTGCCAAACTTACCTCCACGGTTGCACATTTCAGAATTAGGATCAGCACAAGGATTAAATCTTAAGATAGAAGATGATGTTGTTGTGCTGAACAGTACTGAATCTGCAACACACAAGAACTTGGACAAAATGTGCCAGTATATTTATAAAATATCCCCTAATGCAAATACCTGTCCAACAGCTATGGGGTTCCAATATTGCGACAACAAAGGAAAATTTGCTAACAACCTCAGCAGCAAACTTACACACACATCATCAAGTGAATACATCAATATAAACTCAGAAGTGCTTGTTAGTAAGCAAATTATTTCCACATCACAATCAAGCGGTTCTTTTCCAATGGATTTCAATGCAAGGCAGGAGAAGTATACTTCAAAATTTTCACAGAAGTTCCAAAGGGTGGAATGTTTGGAGTCAAGTGATCTAGGATCATGCAACATGGGCACTTCAATTGTTTGTGATGGAAGCCAGTTGTCTCCCACGTCTGTGATTGCTGTAACCACAGATTTGGGATTAGGAATGTGCTCCTCTCCTACCAGCAATAAATATAAGAAACCTTCCAGTCAATTTACAGTTGAATCTCCAAAGGAAATCTCAAGTTTATTTTCTTCAAAATTTAACGTTGCTGGTGGAAACATCTTGAAACATCCATCCCAGCCATCAACCTTCTTAAGTTCTGACTTTTGCGGACAAGTTGATGCAAGGAACTCCAAAATTCTTCTCGATGTCCTTACCAAGGAGGTTAGCTGGCAAGATGAAGCCATTAGTGTCATCAGCAAAACAATAGCTGGCAGCCGTACAAAAAGGGTTGGAGCAAAGCACAGGGGTGACGTGTGGATGAATTTTGTTGGACCTGACAGGAATGGTAAAAAGAAAATTGCTGTTACTCTAGCAAAGTTCTTGTATGGAAGCCGGGATAGATCTATTTTTGTGGATCTAAGTTCTGAAGAAACGAAAGGATGCATTGTGCAATTCAGAGGAAAGACTACTCTTGATTTAATTGTAGGTGAATATATCAAGAACCGTTTCTCTGTGGTCTTCCTAGAAAATGTAGACAAGGCAGACGTGTTAGTTCAAAATAGTTTGTCTCAAGCCATGAAGACTGGAAAACTTACAGACTCACGTGGAGGAGAAGTGGGTGTAAACAATGCAATATTTGTGACTTCTTTCTCTGGTCACCAGGCAAGGGAACCTTCCAAATATTCTGAGGAGAGAATAGGAAAGGTAAAAGGGAGGCCTATCAAAATAACAGTTGAAAATGTGAGTGGCGACATCAAAAGCCGAAGTGTTAGTGTGGATGATGGTTCAATAGATAACATTCCCAATCCAGTTGTATCAAATAAGCGAAAGTTCGTTAGCCACAATGAATTTCATGATCAGCATTTACTCTCAGACACGTCTAAAAAGGCATATGCAACACCAAATTGGCATTTAGATTTGAATCTTCCAGCTGAAGAGAATGAACCTCAAGTTCGACAAATGAGTGATGGAAACTTGGAACATGCATCAACTGATATGCAAAACCTTTGGTTGCAAGATTTGTCTGAACAGGTTGATGAAACAGTTGTTTTTAAACCTTATAATTTTGATGCACTTGCGGATAGAGTGATGAAAGTGATCACAAGTAGCTTCCACAAAACTATTGGATCTGAATGTGCCTTACAGATAGAATCAGAAGTCATGGACCAATTGCTTGCAGCTGCGTATGACTCAGATGGAGTTAACGGCATAGAAAATTGGGTAGAACAAGTTCTCTGTGGAGGATTTACAGGGGTACAGAGAAGGTACAACCTTACCGCTTGTTCTATTGTGAAACTTGCTACATGTTCGCATCAAACATCAAATGTGTACCTTCCTCCAACTATAACAATGGATTAA 3030 0.4614 MPTPVAAARQCLTEEAAKGLDDAVSVARRRGHAQTTSLHAVSAMLSHTSSALRDACARSRSAVHSTRLQFRALELSLSVSLDRSLSKSCGGDDPPVSNSLMAAIKRSQATQRRKPENFPLQQPCSVKVDLHHLILSILDDPVVSRVFAEAGFWSSEIKLAILRPLTHLMHQQLPLRRNFPFAFSGEEDADNRRIAEVLSRKSGRNPLLLGACARDALRSFVEAVERQNSAVLAGELCSLRVTRIGREAMEFVGGSCGEEVVSGRFEEIGEMVEQRVGKGVVVDLGELEDLVNEKNGWGESEAVRYVVIGLGKLLEVSYGRLWLIAAAGSYEIYMKFVGRFSSIEKDWDLQLLPIVSIRSSFSAQAYHTPRCESSMLAASTVGLCLPNLPPRLHISELGSAQGLNLKIEDDVVVLNSTESATHKNLDKMCQYIYKISPNANTCPTAMGFQYCDNKGKFANNLSSKLTHTSSSEYININSEVLVSKQIISTSQSSGSFPMDFNARQEKYTSKFSQKFQRVECLESSDLGSCNMGTSIVCDGSQLSPTSVIAVTTDLGLGMCSSPTSNKYKKPSSQFTVESPKEISSLFSSKFNVAGGNILKHPSQPSTFLSSDFCGQVDARNSKILLDVLTKEVSWQDEAISVISKTIAGSRTKRVGAKHRGDVWMNFVGPDRNGKKKIAVTLAKFLYGSRDRSIFVDLSSEETKGCIVQFRGKTTLDLIVGEYIKNRFSVVFLENVDKADVLVQNSLSQAMKTGKLTDSRGGEVGVNNAIFVTSFSGHQAREPSKYSEERIGKVKGRPIKITVENVSGDIKSRSVSVDDGSIDNIPNPVVSNKRKFVSHNEFHDQHLLSDTSKKAYATPNWHLDLNLPAEENEPQVRQMSDGNLEHASTDMQNLWLQDLSEQVDETVVFKPYNFDALADRVMKVITSSFHKTIGSECALQIESEVMDQLLAAAYDSDGVNGIENWVEQVLCGGFTGVQRRYNLTACSIVKLATCSHQTSNVYLPPTITMD 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00489 1009 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 974 - -
Spst8g00489 1009 Gene3D - 606 812 IPR027417 -
Spst8g00489 1009 ProSiteProfiles Clp repeat (R) domain profile. 8 167 IPR004176 -
Spst8g00489 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 774 IPR027417 -
Spst8g00489 1009 Gene3D - 10 164 IPR036628 -
Spst8g00489 1009 SUPERFAMILY Double Clp-N motif 12 158 IPR036628 -
Spst8g00489 1009 Pfam AAA domain (Cdc48 subfamily) 664 788 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00489 Spst-Chr8 4604638 4611092 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00489 - - pvu:PHAVU_008G223600g 1588.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00489 8 4604638 4611092 Spst8g00489 8 4604638 4611092 ECH
Spst7g00144 7 1065288 1069180 Spst8g00489 8 4604638 4611092 ECH
Spst6g00095 6 1098113 1104109 Spst8g00489 8 4604638 4611092 ECH
Spst8g00110 8 862290 867343 Spst8g00489 8 4604638 4611092 ECH
Spst8g00489 8 4604638 4611092 Spst6g00095 6 1098113 1104109 ECH
Spst8g00489 8 4604638 4611092 Spst8g00110 8 862290 867343 ECH
Spst8g00489 8 4604638 4611092 Spst8g00489 8 4604638 4611092 PCT