Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00095 ATGCCGACGCCGGTAAGCACCGCGAGGCAGTGTCTGACAGACGAGGCGGCGCGTGCACTCGACGACGCCGTCACAGTTGCCCGCCGCCGCAGCCACGCCCAGACCACCTCCCTCCACGCCGTCTCCGCCCTCCTCTCCCTCCCCTCCGCCGCGCTCCGCGATGCCTGCGCCCGCTGCCGGAGCTGCTCCTACTCCCCCCGCCTCCAGTTCCGCGCTCTCGAGCTCTCCGTCGGCGTCTCCCTCGACCGCCTCCCCACCACCAAAACCGCCTCGGACGGCGGTGCCGGCGACGAGGGTCCCCCTGTCTCGAACTCCCTCATGGCCGCCATAAAACGCTCTCAGGCGAACCAGCGCCGCCATCCGGACAGCTTCCACCTTATGCAGATGATGCAGCAGCAGCAGCATCATCAAACGACGTCGTTGCTGAAAGTCGAACTCAAACACTTCATTCTCTCTATTCTGGACGACCCTATCGTGAGCCGCGTCTTCGGGGAAGCCGGTTTCAGAAGCTACGACATCAAGCTCGCACTTCTTCAACCACCTCCACCTGCAAGAATCTTCTCGAGGTTAACCCCTCCGGTTTTCCTCTGCAACCTCGAACCGGTTCAGACCGGTTCGCTGCTCGACGAGAATTGCCGCAGAATCGTGGAAGTGGTGACGAGGAAGAGTAAAAGGAACCCTCTTTTGATGGGGGTGTACGCGAAAATCGCTCTCAAGAGCTTCATCGATTGCGTGGAAAATCGTAAAGGTGGGGTCTTGCCCTGTGAACTGAATGGATTGAGTGTGGTTTCGGTGGAGAAGGAGGTTGGGGAGTTCTTGAGGGAAGGTGGGAGCGGAGGGAAGATTTTCGAAGATGTGGGTCGTTTGGTGGAGCAATGTTCTGGTGCTGGGGTTGTTGTGTGTTTCGGGGAGATTGAGAATTTTGTCGGGGGGGATGAGGAGGGTGTTGGGTTTGTGGTTTCGCAGTTGACGAGGTTGTTGGGGGTTCATGTTGGGAAGCTGTGGTTGGTGGGCGTGGCGAGAACCTCGGAGGCCTATTCTAAGTTCCTGAGGTTGTTCCCTACAGTGGACAAGGATTGGGATCTGCATCTCCTGACCATGACCTCTGCCACCCCTTTCATGGAAGGGCTCTACCCCAAGTCCAGCTTGATGGGGTCCTTTGTGCCATTTGGTGGGTTCTTTTCTACACCTTCTGAGATGAAAAATCCCGTTAACTGTACGAATGCAACATCTTTAACACGGTGTGACGCATGCAATGAAAAGTGTGAACAAGAGGTTGCTGATATTTTGAAGGTAGGCCCTGCTACTTCAGCATCTGGTTACTCAACGAGCTTGCCTTGGTTACAAAAGGTTAATGTGGAGACAGATAGAGGATTGGATGTGGCAAAGACTAATGAAGAAAACACAATTTTGAATGGAAAGATCTTCGGATTGCAAAGGAAATGGAGCGATATTTGTCAACGTCTTCATCAAAACCGATCATTACCTGAATTTGATATTTCTAAAACAAGGTTCCAAGTTCCTTCCCTTGAGGGGTTTCAATTTGGTCCAGGAAGTAGCAGCAAAGGTCCACTCCATAGTGAAATCCAATATTCTAAAATCTCTTGCATGTCTATTGAGTCACAAAGTGCATTTCCATTTAAACAGATATTACCGGTTTCAGTACCTTTTGACACTGTTAGCATAGCTGATGAAGTAGATTACATAGCAAAAGTTTCTAAGAGTGATATGCAGAATACTTGGGTTTCTCCTTCCCCTAAGGCCAATTTGAGTCTACTTGATCACACATCATCTTCATCCTTTACTCCTGTGACCACTGATTTGGGATTGGGAACAATATATAAATCAGCTGCTCATGAGCCAGACACCCCAAAACTAAGTGATCACAAGAAGCATCTCCACAACTTGCCAGATTCCCTTTCAAGTGATTTTAATCCTATGAATGAGAGTACTTCACACCAAATTGCAAGATCTTCTTCATGCTCGGGTCCAAATCTAGAAGGGAATTTTGAAACAGTAGATTTCAAGTCACTTTACCATCTTCTCACTGAAAAGGTAGGCTGGCAGGATGAGGCAATATATGCAATCAATCGAACTGTATCACGTTGTAGATCTGGTGCTGGAAAGCGCAGTAGTGGCTCACATGTTAGAGCAGACGTATGGCTTGCATTCCTTGGACCTGATAGACTTGGGAAAAGAAAACTTGCTTCAGCACTTGCTGAAATTTTATTTGGAAACAAACAAAGCCTAATCACTGTTGATTTGAGCTCCCAAGACAGGTGTTACTCATCAAACTTGAATTTTGAATTCCAAAATTCATATTGTCATGATGTGCTTATGAGGAAGACAGTTGTGGACTATATTGCTGGGGAGTTGAGTAAAAAGCCACATTCAGTTGTCTTTCTTGATAATGTGGATCAAGCAGATTTTCTAGTGCAGAATAGTTTGTTCCAAGCAATAAGGACTGGTAAATTCTCGTATTCGCATGGAAGGGAAATCAGCATCAACAATGCAATGTTTATTGTAACCTCTAGTGTGTTTAAAGGCAGTGACTGTTTGAATTTGGAGGAGGATCCTAAAATGTTTCCAGAGGAAAGAATCCTAGAAGCTAAAAGATGTCAAATGCAATTATCACTTGGACGTTCTTCTCAGGATGCCAAAAGGAGTGGTTGCACTAATGTGAAGGTTGTTCAAAGAAAAGGGACCTCCAAAACAACATTCCTGAATAAAAGAAAGCTAGTAGAAAGTGGTGATTCTGAAGAGAAAGCATCATGCAAGACAGTGAAACATGTCAGGGAGGCACCAAGGTCGTATCTGGATCTTAATATGCCTCTCGAGGAGGTTGAAGAGGACAACAATTACAATGATTATGAAAGTGAATCAATAGTTGAAAACTCCGGTGCCTGGTTAATTGACTTGTGTGATCAAGTTGATGAAAAAGTTGTTTTTAAGCCATTCAATTTTGATTCGCTAGCTGAGAAAGTAATAAAAAGCATTGACATACAATTTCAAAAGATTTTTGGAACAGAGTATATGCTGGAAATTGAGTATGAGATCATGACACAGATTCTTGCAGCGGCTTGGTTATCTGACAAGAAAAAAGCACTGGAAGATTGGGTTGAACATGTTCTTGGCAGAAGCTTTGCTGAAGCTCAACAGAAGTACCACTTTGCACCTGAATATGTGATGAAACTGGTTAACTGTGAAAGAATTTTTTTGGAAGAAAAATCTCCTGGAGTATGCCTTCCAGCTAGAATTAACTTGAACTGA 3270 0.4615 MPTPVSTARQCLTDEAARALDDAVTVARRRSHAQTTSLHAVSALLSLPSAALRDACARCRSCSYSPRLQFRALELSVGVSLDRLPTTKTASDGGAGDEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMMQQQQHHQTTSLLKVELKHFILSILDDPIVSRVFGEAGFRSYDIKLALLQPPPPARIFSRLTPPVFLCNLEPVQTGSLLDENCRRIVEVVTRKSKRNPLLMGVYAKIALKSFIDCVENRKGGVLPCELNGLSVVSVEKEVGEFLREGGSGGKIFEDVGRLVEQCSGAGVVVCFGEIENFVGGDEEGVGFVVSQLTRLLGVHVGKLWLVGVARTSEAYSKFLRLFPTVDKDWDLHLLTMTSATPFMEGLYPKSSLMGSFVPFGGFFSTPSEMKNPVNCTNATSLTRCDACNEKCEQEVADILKVGPATSASGYSTSLPWLQKVNVETDRGLDVAKTNEENTILNGKIFGLQRKWSDICQRLHQNRSLPEFDISKTRFQVPSLEGFQFGPGSSSKGPLHSEIQYSKISCMSIESQSAFPFKQILPVSVPFDTVSIADEVDYIAKVSKSDMQNTWVSPSPKANLSLLDHTSSSSFTPVTTDLGLGTIYKSAAHEPDTPKLSDHKKHLHNLPDSLSSDFNPMNESTSHQIARSSSCSGPNLEGNFETVDFKSLYHLLTEKVGWQDEAIYAINRTVSRCRSGAGKRSSGSHVRADVWLAFLGPDRLGKRKLASALAEILFGNKQSLITVDLSSQDRCYSSNLNFEFQNSYCHDVLMRKTVVDYIAGELSKKPHSVVFLDNVDQADFLVQNSLFQAIRTGKFSYSHGREISINNAMFIVTSSVFKGSDCLNLEEDPKMFPEERILEAKRCQMQLSLGRSSQDAKRSGCTNVKVVQRKGTSKTTFLNKRKLVESGDSEEKASCKTVKHVREAPRSYLDLNMPLEEVEEDNNYNDYESESIVENSGAWLIDLCDQVDEKVVFKPFNFDSLAEKVIKSIDIQFQKIFGTEYMLEIEYEIMTQILAAAWLSDKKKALEDWVEHVLGRSFAEAQQKYHFAPEYVMKLVNCERIFLEEKSPGVCLPARINLN 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00095 1089 ProSiteProfiles Clp repeat (R) domain profile. 8 183 IPR004176 -
Spst6g00095 1089 Pfam AAA domain (Cdc48 subfamily) 722 846 IPR003959 GO:0005524|GO:0016887
Spst6g00095 1089 Gene3D - 10 179 IPR036628 -
Spst6g00095 1089 SUPERFAMILY Double Clp-N motif 12 125 IPR036628 -
Spst6g00095 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 846 IPR027417 -
Spst6g00095 1089 Gene3D - 653 885 IPR027417 -
Spst6g00095 1089 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1053 - -
Spst6g00095 1089 CDD RecA-like_ClpB_Hsp104-like 674 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00095 Spst-Chr6 1098113 1104109 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00095 - - gmx:100776148 1816.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00095 6 1098113 1104109 Spst6g00095 6 1098113 1104109 ECH
Spst6g00095 6 1098113 1104109 Spst8g00489 8 4604638 4611092 ECH
Spst6g00095 6 1098113 1104109 Spst8g00110 8 862290 867343 ECH
Spst8g00489 8 4604638 4611092 Spst6g00095 6 1098113 1104109 ECH
Spst7g00144 7 1065288 1069180 Spst6g00095 6 1098113 1104109 ECH
Spst6g00095 6 1098113 1104109 Spst8g00110 8 862290 867343 PCT