Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00110 ATGCCCACGCCGGTCAGCATAGCAAGGCAATGCTTGACGGACGAGGCGGCGCGTGCGCTAGACGACGCCGTCACCGTGGCGCGCCGCCGATGCCACGCGCAGACGACGTCGCTCCACGCCGTCTCCGCCCTGCTCGCGCTGCCATCATCCGCCCTGCGCGAGGCCTGCGGCCGCGCGCGCACAAGCGCGAGTGCCGCCAGGTTCACCGCCACGTACTCGCCACGCCTCCAGTTTCGCGCGCTGGAGCTCTCCGTGGGCGTGTCGCTGGACAGGCTTCCGTCGTCGAAAGGAGGCGGCGGCGAGGAGGAGCCGCCGGTGTCGAACTCGCTCATGGCAGCCATTAAGCGGTCGCAGGCGAACCAGCGAAGGCAGCCGGAGAGCTTCCACACGTTCCAGCAGAGCCAGCTCGGGGGAACGGCGTCGTTTCTGAAAGTTGAGCTGAAGCACTTCATTTTGTCTATCCTCGACGATCCAATCGTGAGTCGCGTCTTCGCGGAAGCGGGGTTTCGAAGCTGTGACATCAAACTCGCGCTGCTTCGACCGCCTCTTCCTCCGGTTCAGCATCGTTTCGCTCGGGCCCCTTCAGTTTTTCTCTGCAACCTCGAACCTGACCGGCCCGACGAAAATATTCGCAGGATCGCGGAGGTGCTGTCAAAAAAGAGCAAGCGAAACCCTTTATTGATGGGTGTTTATGCTAAAAGTGCTCTGAGGGGTTTTGTTGAGTTGGTTCAGAAGGGTCGAGGGGGTTCGGTTTTGGGTTCGGAGTTCAGGGTCGTTTGTTTGGAGAGGGAGATTGGGAAATTTTTAAAAAGGGGTGGGAGCGAGGAAGAGAAAGTGGTGGCTGTGAAGTTGAAGGAGTTGGAGCAGCAATGCGAGGGTTGTTCTAGTTCTGGTTCTGGTTCTGGGATTGTTGTTAGTTTCGGGGAGGTTGAGGTTTTTGTAGGGGAGGATGTGCTTGTTGACGCTGTAAGGTTTATTGTTTCGGGGCTAACGAGGTTATTAATGATTGGCGGCGAGAAGGTTGCGTTGATAGGAGTGGCGGAAACCTCTCACGCTTATTCCAAGTTCCTGGGCTTGTTTCCAAATTTGGAAAACGATTGGGATCTTCATTTGCTTACTGTCACTTCCGCCACTCCTTCTATGGAAGGGCTCTACTCTAAGTCCAGCTTGATGGGGTCCTTTGTTCCATTTGGTGGGTTCTTTTCTACACCTGAAATCGGAAGTCCCGTGAACTCCACGAATGGATCTGTTACCCGTTGTGACACATGCAATGAAAAATGTGAGCAAGAAGTTGCTGATATTCTGAAGGTAGGTCCTTCAACTGGTTACTCAACAAGCTCACCCTGGTTACAAAAGGTTGTTAACGCGGACACGCATAGAGGGTCAGATGTGGGAAAGACTAGTGAAGAAAATACAAGTTTGAATGATAAGATCTTGGGATTTCAAAACAAATGGAGTGATATTTGTCAGCGTCTTCATCACAAAAGCTCACTGCCTCACTTTGATATTTCTCAGACAAGGTCCCAAGCTCCAGCATATGAGACTTTACGGTTTGGTCCAGGTTTTAAGGAAAGCAGCAGTAAAGATCCATCGGGCAGTGAATTCCAACATTCTAGTCAAATTTCTTACATGCCCAAAGGGTTGCATACTACTTTTCCATTACCTTCCGATACAATCAGTGTTCATACTATAACTGATGATGTTTCAAAAGTTTCAGAGACACTGCAAATTGATGTGAAAACCCCTTGGGTCGTCCCTTCCAGTGTGCTTGACCACAGATCATCGTCATCCCACACACCTGTGACCACAGATTTAGGACTGGGAACGTTATATACATCAGCTTCTCAGGATCCAGATACCCCAAAACTACAAGATCAAAGAAAGCATCTTCAGCACTTGTCAGACTCTATTTCAACTGATTGTGATGCTATTGATGAAAATACTTCACACCAAATTCCTAGATCTTCTTGCTCTGGTTCAAATTTTGACAGAAAATTCGATTTAGCAGATTTCAAGTCTCTTAATCGACTTCTCACTGAAACGGTTGGCTGGCAGGATAAAGCCATATGTGCTATCAGTCAAACTTTGTCCCTTCGTAAATCTGGTGCAGGAAAGAGTAGAGGCTCACTAGGTAGAGCAGACATATGGTTGGCTTTCCTTGGACCAGATAGACTTGGAAAAAGAAAAATTGCTTCAGTTCTTGCAGAGACTATATTTGGAAACGCTGAAAGCCTAATCTCTGTGGATCTGGGCTTTCAGGACAGCTTTTACCCATTGAACTCGGTTTTTGAATGCCAAAAATCACATTGTTATGATGTGCTTAGGAGGAAGACAATTGTGGACTATCTTGCTGGAGAGTTGAGCAAAAAACCCCACTCCGTTGTCTTTCTTGAAAATATAGATAAAGCTGATTTTCTGGTGCAGACTAGTTTGTTGCAGGCAGTAAGAGCAGGCAAATTTCCAGATTCGCATGGAAGGGCAATTAGCATCAATAACACAATCTTTCTTGTAACCTCAACTGTCTGCAAAGGAAGTGGTTCTTCGGTTTCAGAGGAGTCCAAGATGTTTTCAGAGGAAAGAATCCTTGAAGCCAAAAGATGTCAAATGCAATTATTACTAGGACATGCTTCTGAGGATGCCAAAATAATTTGTGGCACAAATGTCAAGGTTGTACCTAGAAAAGGTTTTTCCAAATCATCATCTCTGAACAAAAGAAAGCAGACTGATCTTAGTGATTCCAAGGAGGGAACAACAAGCAAGATGCAGAGACAGGACAGCAAGGCATCTAGATCTTATCTCGATTTAAACATGCCTGTAGAGGAGGGTGATGAGGGTGTCAATGACAATGACCAAGAAAGTGAATACATAACAGACAACACAGACACCTGGTTGAGTGATTTCTTTGATCAAATTGATGAGAAAGTGGTGTTTAAGCCATTCAACTTTGATGAGCTTGCTGAGCAAGTATTAAAAGGCATTGACATACTATTTCGAAGAACATTCGGTTCAGAGCTTCAGCTGGAAATTGATTATGAGGTAATAACACACATACTTGCATCTGCTTGGTTATCAGACAAGAAAAATGCAGTGGAGAATTGGGTTGAACATGTTCTTGGCAGATGCTTCGTTGAAGCTCGGCAGAAGTACCATCCTGTATCTCAATATGTTGTGAAACTGGTTAACTGTGAATCCATTTTTGTGGAAGAGCAAGCTCCTGGTGTATCCCTTCCAGCTAGAATTAACCTGGACTAA 3252 0.4683 MPTPVSIARQCLTDEAARALDDAVTVARRRCHAQTTSLHAVSALLALPSSALREACGRARTSASAARFTATYSPRLQFRALELSVGVSLDRLPSSKGGGGEEEPPVSNSLMAAIKRSQANQRRQPESFHTFQQSQLGGTASFLKVELKHFILSILDDPIVSRVFAEAGFRSCDIKLALLRPPLPPVQHRFARAPSVFLCNLEPDRPDENIRRIAEVLSKKSKRNPLLMGVYAKSALRGFVELVQKGRGGSVLGSEFRVVCLEREIGKFLKRGGSEEEKVVAVKLKELEQQCEGCSSSGSGSGIVVSFGEVEVFVGEDVLVDAVRFIVSGLTRLLMIGGEKVALIGVAETSHAYSKFLGLFPNLENDWDLHLLTVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPEIGSPVNSTNGSVTRCDTCNEKCEQEVADILKVGPSTGYSTSSPWLQKVVNADTHRGSDVGKTSEENTSLNDKILGFQNKWSDICQRLHHKSSLPHFDISQTRSQAPAYETLRFGPGFKESSSKDPSGSEFQHSSQISYMPKGLHTTFPLPSDTISVHTITDDVSKVSETLQIDVKTPWVVPSSVLDHRSSSSHTPVTTDLGLGTLYTSASQDPDTPKLQDQRKHLQHLSDSISTDCDAIDENTSHQIPRSSCSGSNFDRKFDLADFKSLNRLLTETVGWQDKAICAISQTLSLRKSGAGKSRGSLGRADIWLAFLGPDRLGKRKIASVLAETIFGNAESLISVDLGFQDSFYPLNSVFECQKSHCYDVLRRKTIVDYLAGELSKKPHSVVFLENIDKADFLVQTSLLQAVRAGKFPDSHGRAISINNTIFLVTSTVCKGSGSSVSEESKMFSEERILEAKRCQMQLLLGHASEDAKIICGTNVKVVPRKGFSKSSSLNKRKQTDLSDSKEGTTSKMQRQDSKASRSYLDLNMPVEEGDEGVNDNDQESEYITDNTDTWLSDFFDQIDEKVVFKPFNFDELAEQVLKGIDILFRRTFGSELQLEIDYEVITHILASAWLSDKKNAVENWVEHVLGRCFVEARQKYHPVSQYVVKLVNCESIFVEEQAPGVSLPARINLD 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00110 1083 ProSiteProfiles Clp repeat (R) domain profile. 8 185 IPR004176 -
Spst8g00110 1083 Gene3D - 651 979 IPR027417 -
Spst8g00110 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 664 1021 IPR027417 -
Spst8g00110 1083 Pfam AAA domain (Cdc48 subfamily) 718 852 IPR003959 GO:0005524|GO:0016887
Spst8g00110 1083 MobiDBLite consensus disorder prediction 518 539 - -
Spst8g00110 1083 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1051 - -
Spst8g00110 1083 MobiDBLite consensus disorder prediction 897 932 - -
Spst8g00110 1083 CDD RecA-like_ClpB_Hsp104-like 670 839 - -
Spst8g00110 1083 MobiDBLite consensus disorder prediction 905 921 - -
Spst8g00110 1083 Gene3D - 10 180 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00110 Spst-Chr8 862290 867343 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00110 - - vun:114193089 1701.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00110 8 862290 867343 Spst8g00110 8 862290 867343 ECH
Spst8g00110 8 862290 867343 Spst8g00489 8 4604638 4611092 ECH
Spst6g00095 6 1098113 1104109 Spst8g00110 8 862290 867343 ECH
Spst8g00489 8 4604638 4611092 Spst8g00110 8 862290 867343 ECH
Spst7g00144 7 1065288 1069180 Spst8g00110 8 862290 867343 ECH
Spst6g00095 6 1098113 1104109 Spst8g00110 8 862290 867343 PCT