Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g00144 ATGAGAACGGGAAGCTGCGCTGTGCAACAGGGTCTAACCCCAGAAGCGGCAAGCATAGTGAAGCAAGCAGTGACACTGGCGAAGCGTCGTGGGCACGCGCAAGTGACACCTCTCCATGTGGCAAACACGATGCTCTCGATCACCAACGGGCTTCTAAGAACCGCGTGTCTCCAATCCAACTCTCACCCTCTCCAGTGCAAGGCCTTGGAGCTTTGCTTCAACGTTGCGCTGAATCGGTTACCGGCTTCAACCTCTTCCAGCCCCATGTTGCAAGGTTCTCACCACCACCACTCCCACGCGTGTCCCTCTATCTCAAACGCTTTGGTTGCCGCGTTCAAAAGGGCTCAAGCACACCAACGACGTGGATCCATTGAGAATCAACAACAACCACTCCTGGCAGTGAAAATAGAACTCGAGCAACTCATTATTTCGATCTTGGATGACCCTAGTGTTAGCCGAGTCATGAGAGAGGCTGGGTTCTCTAGCACTCAAGTGAAAAGCAACGTTGAACAGTCGGTTTCTTTGGAAATATGCTCTCAGAATAACGGTAGTGGTAATAGTAATACTAAGGGAAAGGAAAACAACAGTAGTGGAGAGAAAGGGTTGGTGTTGGATCCCATTAGGGGTGAGGACGTTGCTAGTGTTATTGATAATTTGGGGAGTCAGAGAAAGAGCAGTGTTGTGATAGTGGGAGAGTGTGTTACTAGTCTTGAGAGTGTAGTTAGAGGAGTGATGGAAAAGGTTGATAAAGGGGACGCTGGTGATTGTCTTAGGGGTGTCAAATTTATATCTCTTTCTCTTTCTTCTTTTGGGAACGTTTCAAGAGTGGAAGTTGAGCAAAAGGTTGAAGAGCTTAGGAGTCTTGTGAAGGGAGGTGAACATAGCAAAGGGTACGTTTTGTATTTGGGAGATCTTAAATGGTTGTTTGATTATAGGGCTCGTGGATCACAAGGGAGAGCGTGTTATTGTTCTGTAGATCACATGGTGATGGAGATTGGGAAGCTTGTGAGTGGGGTTGAAGAGAATGGTGCAAGGTTTTGGGTGATGGGTGTTGCCACTTTTCAAGCTTACATGAGATGCAAAAATGGCCATCCATCGCTGGAGACTCTTTGGGATCTTCATCCTATTACTATCCCTGCCGGAAGCCTGCGCTTGAGTCTCATCACTGACAGTGGTCTACAAATTCAGCCCACAAACAAGAAAGCTGACAACAGAACTAGCTGGCTCTTACTCGAAGGAGAGGGGGATGATCAGAAACAACAACCTTGCTTCCCGGAACCTTCCACCAAGAATGAGACCGAAGTTCGAAGCTTGCAAAACAGTACTTGCAATAGTGACTCCTCAAGTTCAACCCTCCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCACCTATAATGATCAGAATTGTGTCCCAGTTGGAGAGCTTTGCAAAAAGTGGAACTCTATGTGTAGTTCAATCCAAAAGCAACCTTATCCTTCAGACAAATCCCTCACATTATCCTCAGTATCACCCTCGTCCTCAACCTCAGGTTTCTCATACGAACAACAACATTCTAATTTGCACCAAACCCATCATGAGTGGCAAGTGGCTTCACCCAAAGACTCATTGAATAATAACCAACATTTCTGGATCTCAAACAATGGTTGCAACAACCCCAATGAACCCACTTTGCGAGTGTACATTCCAGAGAACAAGGACAGCACAAAACAACCATTCTCATCTCCCAACCCAAGTTCCAACCCTAATTCCGCTTCTTCCAGTGACATCATGGAAGTGGAGTACGTGAGCAGGTTCAAAGAGTTCAACTCGGAGAACCTGAAAACACTGTGCAACGCGTTGGAGAAAAAGGTGTCGTGGCAGAAGGATATGATACCAGAAATTGCTAGCACCATTTTGCAATGTCGTGCTGGCATGGTGAGAAGAAAAGGAAAAGTGAGAAACAGTGAAGAAGTGAAAGAAGAAACATGGTTGGTCTTCCAAGGTGTTGATGCGGAAGCTAAGGAGAAAATAACAAGAGAATTGGGTCGGCTTGTTTTTGGGTCCCACAACGACGTCGTTAACATAGCATTGAGTAGTTTCGCGTCAACAAGAGCAGATTCGACTGAGGATTATAGCAGGAACAAAAGATCAAGAGAAGAAACAAGTTGCAGTTACATTGAGAGGTTCGCAGAAGCCATGATGAACAACCCTCATAGAGTGTTTATTGTTGAAGATATAGAGCAAGCGGATTATTGTTCTCAACTTGGTTTCAAAAGGGCCATTGAGAGAGGAAGAGTTGCGGATTCAAACGGTGAAGAGATTGCACTTTGTGACGCAATCATCATTCTAAGCTGTGAAAGTTTCAGTTCAAGGTCAAGGACTTGTTCTCCTTCGGTCAAACAAAAATCGTTGACTGAGGAAGAAAAGAATGGTGACATTGCCACTTTGGAGGAGACAAGCCCTTGTGTTTCTTTGGATTTGAATATTTCCATTGATGATGAGAACGAGGTTGAGGATCGATCGGTGGATGAAATTGGGCTTCTTGAATCCGTAGACAGAAGGATTATATTCAACTTTCAGGAATTTTGA 2580 0.4516 MRTGSCAVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLSITNGLLRTACLQSNSHPLQCKALELCFNVALNRLPASTSSSPMLQGSHHHHSHACPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQSVSLEICSQNNGSGNSNTKGKENNSSGEKGLVLDPIRGEDVASVIDNLGSQRKSSVVIVGECVTSLESVVRGVMEKVDKGDAGDCLRGVKFISLSLSSFGNVSRVEVEQKVEELRSLVKGGEHSKGYVLYLGDLKWLFDYRARGSQGRACYCSVDHMVMEIGKLVSGVEENGARFWVMGVATFQAYMRCKNGHPSLETLWDLHPITIPAGSLRLSLITDSGLQIQPTNKKADNRTSWLLLEGEGDDQKQQPCFPEPSTKNETEVRSLQNSTCNSDSSSSTLPAWLQQYKNENKGITYNDQNCVPVGELCKKWNSMCSSIQKQPYPSDKSLTLSSVSPSSSTSGFSYEQQHSNLHQTHHEWQVASPKDSLNNNQHFWISNNGCNNPNEPTLRVYIPENKDSTKQPFSSPNPSSNPNSASSSDIMEVEYVSRFKEFNSENLKTLCNALEKKVSWQKDMIPEIASTILQCRAGMVRRKGKVRNSEEVKEETWLVFQGVDAEAKEKITRELGRLVFGSHNDVVNIALSSFASTRADSTEDYSRNKRSREETSCSYIERFAEAMMNNPHRVFIVEDIEQADYCSQLGFKRAIERGRVADSNGEEIALCDAIIILSCESFSSRSRTCSPSVKQKSLTEEEKNGDIATLEETSPCVSLDLNISIDDENEVEDRSVDEIGLLESVDRRIIFNFQEF 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g00144 859 MobiDBLite consensus disorder prediction 569 591 - -
Spst7g00144 859 MobiDBLite consensus disorder prediction 415 434 - -
Spst7g00144 859 Gene3D - 588 823 IPR027417 -
Spst7g00144 859 Gene3D - 9 174 IPR036628 -
Spst7g00144 859 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Spst7g00144 859 Pfam Clp amino terminal domain, pathogenicity island component 23 50 IPR004176 -
Spst7g00144 859 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 855 - -
Spst7g00144 859 MobiDBLite consensus disorder prediction 178 203 - -
Spst7g00144 859 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Spst7g00144 859 MobiDBLite consensus disorder prediction 570 591 - -
Spst7g00144 859 Gene3D - 204 379 IPR027417 -
Spst7g00144 859 MobiDBLite consensus disorder prediction 494 516 - -
Spst7g00144 859 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Spst7g00144 859 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g00144 Spst-Chr7 1065288 1069180 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g00144 - - var:108320189 1495.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g00144 7 1065288 1069180 Spst8g00489 8 4604638 4611092 ECH
Spst7g00144 7 1065288 1069180 Spst7g00144 7 1065288 1069180 ECH
Spst7g00144 7 1065288 1069180 Spst6g00095 6 1098113 1104109 ECH
Spst7g00144 7 1065288 1069180 Spst8g00110 8 862290 867343 ECH