Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01973 ATGTCATCTGCTGGTGTCACGATCCTTAGTCCTGTTCCAAAGGAACTATTCTGGTCCCCAGATGGATACCATACGCCACTGCACTTGTCGTTGGATCATGAGTTTATTTTCGTATTTCTATCCCATTCTGGATCTTTGACTCCGATGCGAGTTCTTCCATACGATACCATTGAATCGGTGAAACTCAAAATCCAAAAGGCAGAGGGGCTCCCGTCATTGACAAACAAACAAAAGTTGGTTTGTGATGGGCGGGAGCTAGCGCGGAGCAATTCGCTACTGAAGGACTATGGGGTTACGGAAGGAAATGTTTTGCATTTGGTGATTAGGCTGTCGGATCTCCAGACCATCAGTGTGAGAACCTCTTCTGGGAAAGATTTTACATTTCAGGTGGAGAGATGCAGAGATGTTGGGTATATTAAGCAGCAAATTGCAAAGAAGGAGAAGCGCTTTGCTGATCCTGAACAACAGGAGATTGTGTGTAATGGGGAGCTGCTTGAGGATCAGAGGGTTATTGATAATATCTGTAGTAAATATAATGATGCAGTGATTCATCTTTTTGTTAGGGTGAAATACGCAGAAGTTAGGACTGGACAAGATGAGTTGTCTGTCGAGGCAAAGGAGTTGAATGGTACAAAAGAATATGATGTTAGTGAAAATAATTGTAGCCGAGAACATGATGTTAGTAAAGAAAATACAGAAAGGGAGGATGGTGAGCCAATTGTGCAGAGGAAGGCTCTTGATAGAGATCTTCTTCTGGAGCCTGTTATTGTTAATAAGAAAATTGAATTAGCTTCAGGGATTTGGAATATGATAAACTCTACATATGAAGGGCTAAACAGTGGAAATTATCCAATCAGATCTGCAGAGGGTACAGGGGGTGCTTACTTTATGCTTGATTCAACAGGGCAAAAGTATATATCTGTTTTTAAGCCAATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTACCTTTGTCAGTGGATGGTGAAGGCTTAAAGAAGGGTACGAGAGTTGGTCAGGGAGCACTCAGGGAAGTTGCAGCCTATATTTTAGACCATCCAATGAGTGGCCGTCGAACATTATTTGGTGATGAGAAGGGCTTTGCTGGGGTTCCCCCGACTGTAATGGTTAAGTGTTTGCACAAAGGATTTAACCATCCTGGGGACTTGACTACTAAGCTTGGCTCCTTGCAAATGTTCATGGAGAATAATGGAAGTTGTGAGGATATGGGCCCTGGGGCTTTTACAGTAAAGGAAGTACATAAAATTACTGTTCTGGACATGAGACTTGCAAATGCAGATAGACATGCTGGGAATATTTTGATCGGCAAAGAGGAGGAAAATGACCAGGCTGTTTTGATTCCAATTGACCATGGATACTGCTTGCCCACTAGTTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCCCAAGCTCGCCAGCCATACTCCGCCGAGATCATTGACTATATAAGGTCACTGAATGCTGATGAAGATGTTGCCCTTTTGAAGTTTCATGGTTGGGATCTGCCAATTGAATGCGCCCGCACTCTTCAAATCTCAACCATGCTTCTGAAGAAAGGAGTGGAGAGAGGTATGACCCCCTTTGCCATTGGAAGCCTTATGTGCAGGGAATCCTTGAACAAGGAGTCTGTGATTGAGGGAATTGTAAAGGCAGCTCTGGATTCTGTTCTTCCTGGCACAAGTGAAGAAACATTTCTGGATGCTGTTTCTGAAATCATGGACCAGCTCCTTGATGGGATTCTGTCATAG 1779 0.4334 MSSAGVTILSPVPKELFWSPDGYHTPLHLSLDHEFIFVFLSHSGSLTPMRVLPYDTIESVKLKIQKAEGLPSLTNKQKLVCDGRELARSNSLLKDYGVTEGNVLHLVIRLSDLQTISVRTSSGKDFTFQVERCRDVGYIKQQIAKKEKRFADPEQQEIVCNGELLEDQRVIDNICSKYNDAVIHLFVRVKYAEVRTGQDELSVEAKELNGTKEYDVSENNCSREHDVSKENTEREDGEPIVQRKALDRDLLLEPVIVNKKIELASGIWNMINSTYEGLNSGNYPIRSAEGTGGAYFMLDSTGQKYISVFKPIDEEPMAVNNPRGLPLSVDGEGLKKGTRVGQGALREVAAYILDHPMSGRRTLFGDEKGFAGVPPTVMVKCLHKGFNHPGDLTTKLGSLQMFMENNGSCEDMGPGAFTVKEVHKITVLDMRLANADRHAGNILIGKEEENDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSAEIIDYIRSLNADEDVALLKFHGWDLPIECARTLQISTMLLKKGVERGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEETFLDAVSEIMDQLLDGILS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01973 592 SMART ubq_7 114 188 IPR000626 GO:0005515
Spst4g01973 592 SMART ubq_7 36 109 IPR000626 GO:0005515
Spst4g01973 592 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 281 574 IPR000403 -
Spst4g01973 592 Gene3D - 35 114 - -
Spst4g01973 592 Gene3D - 115 193 - -
Spst4g01973 592 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
Spst4g01973 592 Pfam Phosphatidylinositol 3- and 4-kinase 290 539 IPR000403 -
Spst4g01973 592 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 45 565 IPR044571 -
Spst4g01973 592 SUPERFAMILY Ubiquitin-like 24 110 IPR029071 -
Spst4g01973 592 SUPERFAMILY Ubiquitin-like 108 189 IPR029071 -
Spst4g01973 592 Pfam Ubiquitin family 42 110 IPR000626 GO:0005515
Spst4g01973 592 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Spst4g01973 592 SUPERFAMILY Protein kinase-like (PK-like) 427 590 IPR011009 -
Spst4g01973 592 CDD Ubl_ubiquitin_like 116 186 - -
Spst4g01973 592 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01973 Spst-Chr4 60389969 60392398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01973 1 588 Acyl Lipid Metabolism Gene Families AT5G24240 54.469 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01973 - - gmx:100815111 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01973 4 60389969 60392398 Spst9g01463 9 14750805 14753216 ECH
Spst4g01973 4 60389969 60392398 Spst4g01973 4 60389969 60392398 ECH
Spst2g00225 2 1709240 1711194 Spst4g01973 4 60389969 60392398 ECH
Spst6g00583 6 5296225 5298157 Spst4g01973 4 60389969 60392398 PCT