Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00808 ATGAGAACAGGAAGCTGTTCTGTGCAACAAGGGTTAACTCCAGAGGCAGCAAGCATAGTGAAGCAAGCAGTGACACTTGCAAAGCGTCGTGGCCATGCTCAAGTGACTCCACTCCACGTGGCAAACACTATGCTTGGTGTTACCAATGGTTTATTGAGAACAGCTTGTCTTCAATCTCATTCTCACCCTCTTCAGTGTAAGGCCTTGGAGTTATGCTTCAACGTTGCACTGAATCGTTTGCCAGCTACCACTTCAAGCCCCATGTTGGGTTCTACTCATCACTCTCAGTGTCCTTCTATCTCAAACGCCTTAGTTGCTGCCTTCAAACGTGCTCAAGCTCACCAACGCCGTGGATCCATTGAGAATCAACAACAGCCACTTTTGGCAGTGAAGATAGAGCTTGAGCAACTCATAATTTCAATCTTGGATGATCCTAGTGTTAGCAGAGTCATGAGAGAAGCTGGTTTCTCAAGTCCGCAAGTGAAAAGCAATGTGGAACAAGCTGTGTCTTTGGAAATATGCTCTCAGAATAATAATGATGATAATAACCCTTCTTCTATGAGTAGCAAGTCAAAGGAAGATAACAATACAATTACCCTTTCTTCTTCTTCTCATCATCATCAAGCTGGTGGAGAGAACGTGGCCAACAACAAAGCATTGGTGTCGGATCCGATTAGGGTGGAGGACATAACAAGTGTCATAGATAATTTGGCGAATCAGAGAAAGAAAATTAGTGTGATCGTGGGAGAGTGTGTGGCTAGTCTTGAAGGTGTAGTTAGGGGAGTGATGGAAAAGGTTGATAAAGGGGATGTTAGTGAGTCTCTTAGAGGTGTCAAGTTTATCTCTCTTTCTCTTTCTTCTTTTAGTCATTTTTCCAGGGTAGAGGTTGAGCAAAAAGTTGAAGAGCTTAAGGGTCTTGCAAAAACAGGAAAAGGGTATGTTTTGTATCTTGGAGATCTTAAATGGGTGATTGATTATAGGGCCCGTTCTAGCCAGCAACAGGGAAGAGGGTTTTACTGTCCTGTGGATCACATGATAGTGGAGATTGGAAAGCTGATGAGTGGGGTTGGAGAGAGTGGAAGGTTTTGGCTTATGGGTATTGCAACTTTCCAAGCTTACATGACATGTAAAAATGGACAACCATCATTGGAGACTGTTTGGGGTCTTCATCCTATTACTATCCCTGCAGGAAGCTTGAGCTTGAGTCTCATCACTGACAGTGGTCTACAAAATCAGCCCACCAACGAGAAAGGTGACAATAGAACTAGCTGGCTTTTACTCGAAAGAGTTGGAGATGATCACAAGCAACTACCTTGGTTCCCGGAACCTTCATCCAAAATTGAAACCCAAGTTCAAAGCTTGCAAAGCAGTGCTTGTAACAGTGATTCCTCAAGTTCAACCCTTCCTGCATGGCTCCAACAATGCAAAAATGAGAATAAAGGAGTTACCTATAATGATCAGAACTGTGTCACAGTTGGAGAGCTTTGCAAAAAGTGGAGCTCTATGTGTGGTTCAATCCAAAAACAACCCTATCTTTCTGACAAAACCCTCACATTATCACCTTCTTCAAGCTTCTCATATGAGCAGCAAAATTTCTGGATCTCTGAAAGTGGTAACAAGCACAATGAACCAACTTTGAGAGTGTACATCCCAGAGAGTAAGGATCATAGTTCCAACCCTAATTCAGCTTCTTCTAGTGACGTAATGGAAATGGAGTACGTGAGCAAGTTCAAAGAGCTCAATTCAGAGAACCTTAAAACTTTGTGCAATGCTTTGGAGAAAAAGGTTCCATGGCAGAAAGATATAATACCCGAAATTGTAAGCACCATTTTGCAATGTCGATCTGGGATGATAAGAAGAAAAGGGAAAGCGAGAAGCAGTGAGATGAAAGAAGAAACATGGTTGTTTTTCCAAGGAGTTGATATTGAAGCAAAAGAGAAAATAGCAAGAGAATTGGCTAGGCTTGTTTTTGGATCACAAAGCAACCTTGTTTCAATATCACTTAGCAGTTTTGCATCAACAAGAGTAGATTCAACAGAAGATTATTGCAGGAACAAAAGATCAAGAGATGAACCAAGTTGCAGTTACATTGAAAGATTTGCAGAGGCAATCTCTGGTAATCCTCATAGGGTGTTTTTAGTTGAAGATATAGAGCAAGCAGATTATTGTTCTCAACTTGGTTTCAAAAGGGCTATTGAGAGAGGAAGAGTTGCAAACTCAAATGGTGAAGAGATTGGACTTTGTGATGCTATCATCATTCTTAGCTGTGAAAGTTTTACTTCAAGATCAAGAGCTTCTTCTCCTAATAAACAAAAATCCTCTCAAGAAGAAAAGAACTACATTGCTACTTTGGAAGAGACAAGCCCTTGTGTTTCTTTGGATTTGAATATTTCCATTGATGATGATTACGATGAGGATCGATCCGTGGATGACATTGGGCTTCTTGAATCTGTAGACAGAAAGATCATCTTCAAAATTCAGGAACTATGA 2490 0.412 MRTGSCSVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLGVTNGLLRTACLQSHSHPLQCKALELCFNVALNRLPATTSSPMLGSTHHSQCPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSPQVKSNVEQAVSLEICSQNNNDDNNPSSMSSKSKEDNNTITLSSSSHHHQAGGENVANNKALVSDPIRVEDITSVIDNLANQRKKISVIVGECVASLEGVVRGVMEKVDKGDVSESLRGVKFISLSLSSFSHFSRVEVEQKVEELKGLAKTGKGYVLYLGDLKWVIDYRARSSQQQGRGFYCPVDHMIVEIGKLMSGVGESGRFWLMGIATFQAYMTCKNGQPSLETVWGLHPITIPAGSLSLSLITDSGLQNQPTNEKGDNRTSWLLLERVGDDHKQLPWFPEPSSKIETQVQSLQSSACNSDSSSSTLPAWLQQCKNENKGVTYNDQNCVTVGELCKKWSSMCGSIQKQPYLSDKTLTLSPSSSFSYEQQNFWISESGNKHNEPTLRVYIPESKDHSSNPNSASSSDVMEMEYVSKFKELNSENLKTLCNALEKKVPWQKDIIPEIVSTILQCRSGMIRRKGKARSSEMKEETWLFFQGVDIEAKEKIARELARLVFGSQSNLVSISLSSFASTRVDSTEDYCRNKRSRDEPSCSYIERFAEAISGNPHRVFLVEDIEQADYCSQLGFKRAIERGRVANSNGEEIGLCDAIIILSCESFTSRSRASSPNKQKSSQEEKNYIATLEETSPCVSLDLNISIDDDYDEDRSVDDIGLLESVDRKIIFKIQEL* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00808 829 ProSiteProfiles Clp repeat (R) domain profile. 8 172 IPR004176 -
Rops6g00808 829 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Rops6g00808 829 Gene3D - 215 391 IPR027417 -
Rops6g00808 829 MobiDBLite consensus disorder prediction 175 216 - -
Rops6g00808 829 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 825 - -
Rops6g00808 829 MobiDBLite consensus disorder prediction 175 211 - -
Rops6g00808 829 Gene3D - 563 792 IPR027417 -
Rops6g00808 829 Gene3D - 9 170 IPR036628 -
Rops6g00808 829 Pfam Clp amino terminal domain, pathogenicity island component 132 169 IPR004176 -
Rops6g00808 829 Pfam Clp amino terminal domain, pathogenicity island component 23 41 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00808 Rops-Chr6 20740466 20744570 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00808 - - var:108320189 1172.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00808 6 20740466 20744570 Rops11g03951 11 73681598 73686562 ECH
Rops6g00808 6 20740466 20744570 Rops6g00808 6 20740466 20744570 ECH
Rops6g00808 6 20740466 20744570 Rops11g02414 11 41023719 41029901 ECH
Rops6g00808 6 20740466 20744570 Rops9g01283 9 21346623 21352266 ECH
Rops6g00808 6 20740466 20744570 Rops9g00610 9 8684371 8687789 ECH