Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02414 ATGCCAACGCCGGTGAGCGTAGCGAGGCAATGCTTAACTGAGGAGGCGGCGCGTGCCTTAGACGACGCAGTTTCGGTGGCGCGCCGTCGCAACCACTCGCAAACGACGTCGCTTCACGCCGTCTCAGCCTTGCTCTCGCTTCCCTCCTCCGCGCTACGGGACGCGTGCGCGCGTGCAGGAAGTTGGTCCTACTCGCCGCGCGTGCAGTTCCGCGCGTTAGAACTCTCCGTCGTCGTTTCCCTCGACCGGTTGCCAACTTCGAAATCTTCCGGCGCCGGAGATGGCGATGACGAGGGTCCTCCGGTGTCGAACTCTCTTATGGCGGCCATAAAACGCTCTCAGGGGCACCAGCGGCGCCACCCTGAAAGCTTCCACTTGTTGCAAATGATGCAGCAACAGCAACAACATCAAGCCGCGTCGTTTTTGAAGGTTGAGCTCAAGCACTTCATTCTTTCAATACTTGATGACCCTATAGTGAGTCGTGTCTTCGCTGAAGCTGGTTTTCGAAGCTATGATATAAAGCTCACTTTGCTTCAACCTCCACCACCTTCTTTTTCTTCTTCTAGATTCTTCTCTCGGAGGTCCCCACCGGTTTTTCTCTGCAACCTTGAACCGAACCAATCCGGTTCAACCGGGTTCGATGAGAATTGCAGAAGGATTGCTGAAGTTATTTCTGGGAAGAAAAAAAGGAGCCTTCTTTTGATGGGTGTTTATGCAAAAAGTGCTCTTAGGAGTTTCATGGAATGTTTGCAAAAGGGTAAAGTTGGAATTTTTCCAAGTGAGCTTTCTGGGTTGAGTGTGGTTTGTATTGAGAAGGATGTTTCCGAGTTTGTGATTGGATGTGGGAGTGAAGAGAAGATGAGGTTTAAGTTTGATGAAGTGGGTCGTTTAGTAGAGCAATGTTCTGGTCCTGGTGTTGTTGTCAGCATCGGGGAGATTGAGGTTTTTGTTGGAGGAAATAATAATCATGATGTTGTTGTTCCTGCTGTTGGATTCGTTGTTTCGCGGTTGACGAGGTTGTTGGAAGTTCATGGTGAGAAGGTTTGGTTGTTGGGTGTGGCGGGAACCTCTGATGCTTATTCTAAGTTACTGGGTTTGTTCCCAACACTTGATAAAGATTGGGATCTGCATCTTCTGACCGTGACTTCTGCTACCCCTTCAATGGAAGGACTTTACCCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGGTGGGTTCTTTTCTACACCTTCTGATTTCAGAAATCCCATAAGCTGTACAAATGTATCTTTAACTCGGTGTGATACATGCAATGAAAAGTATGAACAAGAAGTTGCTGATATTCTGAAGGTAGGCCCTGCCACTTCAGCATCTGGTTACTCAACAAGCTTGCCTTGGTTACAAAAGGTGAATGTGGACTCAGATAGAGGATTGGATTTGGCAAAGACTAATGAAGAAAACACAAGTTTGAATGCTAAGATCCAAGGATTGCAAAGGAAATGGAATGATATTTGTCAACGTCTTCATCAAAACCGATCATTACCTGAAATTGATGTTTCCCAAACATTAACAAGGTTCCAAGCTCCATTTCATGAGGGGTTTCGATTTGGCTCGAGTGGTGATGGAAGTAGCAGTAAAAGTCCATCCCTTAATAAAATCCAATGTTCTAATCAAATTTCCTACATGTCTAAAGAGTTACAAAGTGCACTTCCATCTAAACAGATATTACCAGTTTCAGTACCTTTTGATACTGTTAGTGTCAATGATGAAGCTGAGCAGGTACCAAAAGTTTCAAAAAGTGACTTGCAGAATACTTGGGTTCCCCCTTCACCTAAGGCCAATATGAGTCTCCTTGGCCACAGATCATCTTTGTCTCTTACTCCTGTGACCACAGATTTGGTATTGGGAACTAAATATACATCAGCTACTCAAGAGCCAGATACACCGAAACGAAGTGATCATAAGAAGCATCTTCAGCGCTTGTCAGATTCCCTTTCAACTGATTTTGATGCTATGAATGAGAGTACTTCACACCAAGTTGCTAGATCTTCTCCCTGCTCGGGTCCAAATTTGGCAGAGAAATTTGAAACAGTTGATTTCAAGTCACTTCACAGACTTCTCACTGCAAAGGTTGGCTGGCAAGATGAGGCCATATATGCTATCATTCGAACTATGTCACTATGTAGATCGGGTGCTGGAAAGCGTAGTGGATCACATGTTAGAGCAGACATATGGCTTGCTTTCCTTGGACCAGATAGACTTGGAAAAAGAAAAATAGCTTCAGCACTTGCAGAAATTTTATTTGGGAACAGACAAAGTCTAATCTCTGTGGATTTGAGCTCCCAGGATAGGTTTTATCCATCAAACTCGATTTTCGAATTCCAAAATTCATGTTGTCATGATGTGCTTAGGAGGAAGACAGTTGTGGACTATATTGCTGGGGAGTTGAGTAAAAACCCACATTCAGTTGTCTTTCTTGAAAATGTAGATAAAGCTGATTTTTTGGTGCAGAATAGTTTGTTCCAAGCTATAAGGACAGGTAAATTTCCATACTCACTTGGAAGGGAAATCAGCATCAACAATGCAATCTTTATTGTAACCTCAACTGTGTTTAAAAGTAAAGACTCTTTTGATTTGGAGAAAGAACCTCAAATGTTTCCTGAGGAGAGAATCCTTGAAGCTAAAAGATGTCAAATCCAATTATCACTTGGACATGCTTCTGAGGATGCCAAAAGAAGTGGTAGCACAAATGTGAAGATTGCACAGAGAAAAGGGACATCCAGACCAACATTTCTGAATAAAAGGAAGCTAGTTGAAAGTAGTGATTCCAAAGAGAAAGCAACATGCAAGACACTAAAACAGGTCAGGGAGGCATCAAGGTCCTATCTGGATCTGAATATGCCTCTAGAGGAAGTTGAAGAAGGCATCAATTACAATGATTGTGAAAGTGAACCTGTAGTAGAAAATCCTGAAGCATGGTTAAATGATTTCTGTGATCAAATTGATGAAAGGGTGGCTTTTAAGCCATTCAATTTTGATTCTCTTGCTGAGCAAGTAATAAAATGCACTGACATACAACTTCGAAGGACATTTGGATCAGAGTTTGTGCTGGAAATTGATTATGAGGTCATGCAACAAATACTTGCGGCTGCATGGTTATCAGACAAGAAAAAAGCAGTGGAGGAATGGGTTGAACATGTTCTTGGCAGAAGCTTTGCTGAGGTCCAACATAAGTACCACCCTACTGCTGGGTATGTCATGAAACTGATTCACTGTGAAAGCATTTTTGTTGAAGAGCAAGCTCCAGGAGTATGCCTTCCAGCTAGAATTAACTTCAACTGA 3324 0.4332 MPTPVSVARQCLTEEAARALDDAVSVARRRNHSQTTSLHAVSALLSLPSSALRDACARAGSWSYSPRVQFRALELSVVVSLDRLPTSKSSGAGDGDDEGPPVSNSLMAAIKRSQGHQRRHPESFHLLQMMQQQQQHQAASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDIKLTLLQPPPPSFSSSRFFSRRSPPVFLCNLEPNQSGSTGFDENCRRIAEVISGKKKRSLLLMGVYAKSALRSFMECLQKGKVGIFPSELSGLSVVCIEKDVSEFVIGCGSEEKMRFKFDEVGRLVEQCSGPGVVVSIGEIEVFVGGNNNHDVVVPAVGFVVSRLTRLLEVHGEKVWLLGVAGTSDAYSKLLGLFPTLDKDWDLHLLTVTSATPSMEGLYPKSSLMGSFVPFGGFFSTPSDFRNPISCTNVSLTRCDTCNEKYEQEVADILKVGPATSASGYSTSLPWLQKVNVDSDRGLDLAKTNEENTSLNAKIQGLQRKWNDICQRLHQNRSLPEIDVSQTLTRFQAPFHEGFRFGSSGDGSSSKSPSLNKIQCSNQISYMSKELQSALPSKQILPVSVPFDTVSVNDEAEQVPKVSKSDLQNTWVPPSPKANMSLLGHRSSLSLTPVTTDLVLGTKYTSATQEPDTPKRSDHKKHLQRLSDSLSTDFDAMNESTSHQVARSSPCSGPNLAEKFETVDFKSLHRLLTAKVGWQDEAIYAIIRTMSLCRSGAGKRSGSHVRADIWLAFLGPDRLGKRKIASALAEILFGNRQSLISVDLSSQDRFYPSNSIFEFQNSCCHDVLRRKTVVDYIAGELSKNPHSVVFLENVDKADFLVQNSLFQAIRTGKFPYSLGREISINNAIFIVTSTVFKSKDSFDLEKEPQMFPEERILEAKRCQIQLSLGHASEDAKRSGSTNVKIAQRKGTSRPTFLNKRKLVESSDSKEKATCKTLKQVREASRSYLDLNMPLEEVEEGINYNDCESEPVVENPEAWLNDFCDQIDERVAFKPFNFDSLAEQVIKCTDIQLRRTFGSEFVLEIDYEVMQQILAAAWLSDKKKAVEEWVEHVLGRSFAEVQHKYHPTAGYVMKLIHCESIFVEEQAPGVCLPARINFN* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02414 1107 Gene3D - 10 179 IPR036628 -
Rops11g02414 1107 Gene3D - 668 930 IPR027417 -
Rops11g02414 1107 ProSiteProfiles Clp repeat (R) domain profile. 8 183 IPR004176 -
Rops11g02414 1107 SUPERFAMILY Double Clp-N motif 12 131 IPR036628 -
Rops11g02414 1107 MobiDBLite consensus disorder prediction 633 654 - -
Rops11g02414 1107 Coils Coil 474 494 - -
Rops11g02414 1107 CDD RecA-like_ClpB_Hsp104-like 693 866 - -
Rops11g02414 1107 Pfam AAA domain (Cdc48 subfamily) 740 874 IPR003959 GO:0005524|GO:0016887
Rops11g02414 1107 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1072 - -
Rops11g02414 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 1043 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02414 Rops-Chr11 41023719 41029901 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02414 - - gmx:100776148 1597.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02414 11 41023719 41029901 Rops11g02414 11 41023719 41029901 ECH
Rops11g02414 11 41023719 41029901 Rops11g03951 11 73681598 73686562 ECH
Rops11g02414 11 41023719 41029901 Rops9g01283 9 21346623 21352266 ECH
Rops11g03951 11 73681598 73686562 Rops11g02414 11 41023719 41029901 ECH
Rops6g00808 6 20740466 20744570 Rops11g02414 11 41023719 41029901 ECH
Rops11g02414 11 41023719 41029901 Rops9g01283 9 21346623 21352266 PCT