Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03951 ATGCCAACACCGGTGGGAGTGGCACGACAATGCTTAACGGCGGAGGCGGGAAAAGCGTTAGACGAGGCAGTTGCGGTGGCGCGTCGACGTGGCCATGCGCAAACGACGTCGCTTCACGCGGTGTCGGCGCTACTATCATCCTCCGTTCTCCGCGACGCATGTTGTCGAGCGAGAAACTCGGCGTATTCGCCGCGGTTACAGTTCAAAGCACTGGACCTGTGTCTTTCCGTTTCACTTGACAGAGCACCTTCCTCGCACAACAACCTTACCTCGGATCACGACCCACCCGTGTCTAACTCCCTCATGGCCGCTATTAAACGGTCTCAGGCTAACCAACGCCGTCACCCTGATAACTTCCACTTTTACCACCAACAGCAACAGCAACAACACCAAACCTTTTCCGTTTCCTCCGTTAAGGTGGAACTCCAACATTTGATTTTGTCTATTCTCGATGACCCGGTTGTGAGTCGGGTTTTCGCTGAAGCGGGTTTTCGGAGCTCCGAGATCAAACTCGCTATTCTCCGGCCACTCCCTCATCTTTTCCGTTCCCGTGGCCCGCCGATTTTTCTCTGCAACCTGCCGGAGAACCCTCGCCGGGGATTCGGGTTCCCCTTTTTTCCCGGTTTCGGCGATGAGGAAGAGAATTTCCGGCGAATCGGGGAGGTTCTTGTTCGGAGCAGGGGTAGGAATCCTCTGCTTCTCGGTGCATGTGCTAATGATGCACTGAGGAGTTTCACGGAGGCTGTGGAGAAACGAAAAGATGGGGTTTTGCCGTTGGAGCTTTCAGGGCTTCGTGTGGTTTGTATTGGGAAGGAGGTGGAGAGTGGTGACGGCGAGGTTGTCGTTACGAGGTTGAAAGAGATTGGTCGGATGGCGGAGGAGTGTGTGGGGCCAGGTGTAGTTGTGAGTTTTGGGGATTTGAAGGGTTTTGTGAATGATTCTTGTGGTGAAGTTGTGAGGTGTGTTGTTGGGGAGTTGGCAAAGTTGTTGCAGCTTCATTATGATAAGTTTTGGCTGCTGGGTGCTGCTGCTAGTTATGAGAGTTACTTGAAGTTTCTAGGTAGGTTCCCTTCTATTGAAAAAGATTGGGACTTGCAGCTTCTTCCTATTACCTCTGTTACCCCTTCTTCTATGCCTGCTGAATCATATCAGAGGCCTAGGTCCAGCTTAATGGATTCATTTGTACCATTTGGTGGCTTTTTTTCATCACAATCTGATCTGAAAGGTACATTAAATGGCTCATTTTATTGTGTTCCTAGCTGTCATCAATGTGGTGAAAAGTGTGAGCATGAAGTCCTTGCTGCTTCAAAGGAAAGATTTTCTGCTTCAGCTGCTGATCCATACCAAACTAACTTGCCTCCATGGTTGCAGATTCAAGAATTTGGCACAGCCAAAGGATTGAATGTGAAGACCAAAGATGATGGTATTTTTCTGGATAGTAGTGAATCTGGGCCACCACAGAAGAACTTGGACAAGATATGCCAGCATCCGCACCTGCGAATCCCTGATTCAAATTCTTGTCCAACTACTGTGGGGTTTCATTGTACTGAAAAAAAAAAGGAAGATGCTGACAACCGCAGTGGCAAAATTACCAACAAATCACCTAGTGAATACATTAATCTCAACTCCCTTGCACCTGTTGGTGTGCAAATGATGTCTACATCACAGTCCAACAGTCCTTTTCCCATGCTTTTCAAGGCAAAGCAGGAGAATTATACTTCAAAACTTCCTGAGATGTTCCAGAAAGTGGAAGATCTCGTGTCAGGTGACCTAAAATCATGCAACGTGTCCAGTTCATGTGTGTGTGATGGTAGTCAAATGTCTCCCACATCTGTGACTTCTGTAACCACAGATCTAGGCTTAGGAATATGCTCTTCTCCTACCAGCAATAAATCAAAGAAACCTACTGTTCAACAACATACAATGGAGCCTCCAAAGGAAATATCAAATCAATTTTCTTCGAACTTTAATTTGGCTGATGGGAATATCTGGAAGCATCCATCCCAGTCTTCATCCTGCTTAAGTTTTGACTATTGTCGACAAGTTGGTGCAAGTAATCCCAAAATTCTTTTTGAAGCTCTTTCGAAGGAGGTAAGCTGGCAAGATGAAGCCTTACGGGCTATCATCAAAACAACAGTTTGCAGCCCAACAAAAAGGGTTTCACGCCGTGGAGTAAATCAGCGGGGTGACATATGGATGAATTTTGTGGGACCTGATAGGCATGGTAAAAAGAAAATTGCTGTTTCTCTTGCTGAGTTATTGTATGGAAGCCGGGAAAGCTTTATTTTTGAGGATCTAAGTTCTGAAGAAATGAAAGGAAGCAATGTGAAATTCAGAGGGAAGACAACCCTTGATTTTGTTGTAGGGGAGTGTTGCAAGAAACCCTTGTCTGTGGTTTTCCTTGAAAATGTTGACAAGGCAGATATGGTTGCTCAAAATAGTTTGTCTCAGGCCATCAAGACAGGAAAAATTACAGACTCTCATGGACGAGAAGTTAGTGTAAACAATGCAATATTTGTGTTTTCCTTCTCAGGTTACCAAAATAGTTCGATGCCAACAAGTGAACCTTCCAACTATTCCGAGGAAAGAATACTGAGATCAAAGGGGGGAGGTATCAAGATAAAAGTTGAACATGTGATTGGAGACATCAGAAGTCAAAACATCAGTGTAGCTAACAATTCAATAGATGCCATTCCTAATCTAATTTCCATAAACAAACGAAAGTTGATTGGTGACAATGAATTTCATGATCCACATTCACTCTCAGATACGGGTAAAAGGGCACATACAACATCAAATTGGCTTTTAGATTTGAATCTTCCAGCTGAAGAGAATGAACCCAAACAAACACATGATGGAAACTCTGAACATATCTCAACTGAGAACCAAAACTTTTGGTTGCAAGATTTGTATAATCAGGTTGATGAAACAGTTGTTTTTAAACCTTATGATTTTGATGCACTTGAGGATAGAGTGTTGAAAGTGGTCAAAAGTAACTTCAACAAAATTCTTGGATCCGAGTGTGCCTTACAGATCCAGACAGAAGTAATGGACCAATTGCTTGCAGCTGCATATGTCTCAGACAGGGATACAGAGGTGGAAAACTGGGTGGAACAAGTTCTATGTGGAGGATTTACTGAAGTACAGAGAAAATACAACCTCACTGCTAGTTCTATTGTGAAACTTGCTACATGTCCAGAGCAAGCTCCAAGTGTACACCTTCCACCAAGGATAATTTTAGACTGA 3246 0.4449 MPTPVGVARQCLTAEAGKALDEAVAVARRRGHAQTTSLHAVSALLSSSVLRDACCRARNSAYSPRLQFKALDLCLSVSLDRAPSSHNNLTSDHDPPVSNSLMAAIKRSQANQRRHPDNFHFYHQQQQQQHQTFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSEIKLAILRPLPHLFRSRGPPIFLCNLPENPRRGFGFPFFPGFGDEEENFRRIGEVLVRSRGRNPLLLGACANDALRSFTEAVEKRKDGVLPLELSGLRVVCIGKEVESGDGEVVVTRLKEIGRMAEECVGPGVVVSFGDLKGFVNDSCGEVVRCVVGELAKLLQLHYDKFWLLGAAASYESYLKFLGRFPSIEKDWDLQLLPITSVTPSSMPAESYQRPRSSLMDSFVPFGGFFSSQSDLKGTLNGSFYCVPSCHQCGEKCEHEVLAASKERFSASAADPYQTNLPPWLQIQEFGTAKGLNVKTKDDGIFLDSSESGPPQKNLDKICQHPHLRIPDSNSCPTTVGFHCTEKKKEDADNRSGKITNKSPSEYINLNSLAPVGVQMMSTSQSNSPFPMLFKAKQENYTSKLPEMFQKVEDLVSGDLKSCNVSSSCVCDGSQMSPTSVTSVTTDLGLGICSSPTSNKSKKPTVQQHTMEPPKEISNQFSSNFNLADGNIWKHPSQSSSCLSFDYCRQVGASNPKILFEALSKEVSWQDEALRAIIKTTVCSPTKRVSRRGVNQRGDIWMNFVGPDRHGKKKIAVSLAELLYGSRESFIFEDLSSEEMKGSNVKFRGKTTLDFVVGECCKKPLSVVFLENVDKADMVAQNSLSQAIKTGKITDSHGREVSVNNAIFVFSFSGYQNSSMPTSEPSNYSEERILRSKGGGIKIKVEHVIGDIRSQNISVANNSIDAIPNLISINKRKLIGDNEFHDPHSLSDTGKRAHTTSNWLLDLNLPAEENEPKQTHDGNSEHISTENQNFWLQDLYNQVDETVVFKPYDFDALEDRVLKVVKSNFNKILGSECALQIQTEVMDQLLAAAYVSDRDTEVENWVEQVLCGGFTEVQRKYNLTASSIVKLATCPEQAPSVHLPPRIILD* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03951 1081 ProSiteProfiles Clp repeat (R) domain profile. 8 179 IPR004176 -
Rops11g03951 1081 Gene3D - 10 175 IPR036628 -
Rops11g03951 1081 Gene3D - 674 880 IPR027417 -
Rops11g03951 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 1024 IPR027417 -
Rops11g03951 1081 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 3 1058 - -
Rops11g03951 1081 Pfam AAA domain (Cdc48 subfamily) 733 842 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03951 Rops-Chr11 73681598 73686562 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03951 - - gmx:100800606 1671.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03951 11 73681598 73686562 Rops11g03951 11 73681598 73686562 ECH
Rops6g00808 6 20740466 20744570 Rops11g03951 11 73681598 73686562 ECH
Rops11g02414 11 41023719 41029901 Rops11g03951 11 73681598 73686562 ECH
Rops9g01283 9 21346623 21352266 Rops11g03951 11 73681598 73686562 ECH
Rops11g03951 11 73681598 73686562 Rops11g02414 11 41023719 41029901 ECH
Rops11g03951 11 73681598 73686562 Rops9g01283 9 21346623 21352266 ECH