Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01636 ATGTCATCTGCTGGTGTTTCCACTCTTAGCCCTGTTCCAAGGGAGTCATTGTTGTTTCCAAATGGATTCCATACCCCATTGCACTGGTCTTTGGACAATCAGTTCATTTTCATATATCTCTCTTATTCGGGGTCTTTGACTCCAATGAGAGTTCTTCCCTCTGATACCATTGAGTCAGTGAAACTCAAAATCCAAAGGAATGAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTTTGTGATGGCCGGGAGCTAGCTCGGAGCAATTCACTACTCAAGGACTATGGAGTTACAGAAGGAAATGTTTTGCATTTGGTTATCAGACTCACCGATCTTCAGACCATCAATGTGAGAACTTCTTGTGGGAAGGAATTCACATTTCAGGTGGAAAGATGTAGGGATGTCGGGTATGTTAAGCAACAGATTGCGAAAAAGGAGAAACAGTTTGCTGATCCTGAACAGCAGGAAGTTGTGTGTAATGGGGAATGGCTTGATGATCAGATGCTTATTGATGATATCTGTAGCAAATATAATGATGTAGTGATACATCTTTTTGTTAGACTGAAATTTGCTGAAGTTAAGACAGGACTAGATGAGTTGTCCATTGTGCCAACAGAGTTGAATGATACAAAAAGTTATGATGTAAATGAAAATGATTGTAGGAGAAAATATGATGTTAGTAAAGAAGATACAAGAAGGGAGTATGAAGCCATTGAGAAACTTGTGCCAAGAAAGGCTCTTGATAGAGATCTTCTTTTGGAGCCAATTATTGTTAACCCAAAAGTTGAATTAGCTTCAGAGATTGGGAATATGATAAACTCTACATATGATGGGTTAGATGGTGGAAAATATCCAATCAGATCTGCAGAGGGTACAGGAGGGGCTTACTTCATGCTAGATTCAACAGGGCAAAAGTATGTATCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTGCCTTTGTCACTAGATGGTGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGAGCTTTCAGAGAAGTTTCAGCATATATTTTGGACCATCCAATGAGTGGCCGCCGATCATTAGTTGGTGACAATGAGAAGGGCTTTGCTGGGGTTCCCCCTACTGTTATGGCTAAGTGCTTTCATAAAGGATTTAACCATCCAGGGGACTTGACTGCTAAGATTGGCTCCTTGCAAATGTTCATGGAGAATAATGGAAGTTGTGAGGATATGGGGCCTGGATCTTTTCCTGTGAAGGAAGTGCATAAAATTACTGTGCTGGACATGAGACTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGCTCAGCAAAGAGCAGGAAAATGGCCATGCTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCCACGAGTTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCTCAAGCTCGCCAGCCATACTCCCCAGAGATAATTGACTATATAAAGTCACTGGATGCTGAAGAAGATATTTCCCTTTTGAAGTTTCATGGATGGGATCTTCCAGTGGAATGTGCCCGCACTCTTCAAATCTCAACCATGCTTCTAAAGAAAGGAGTAGAGAGAGGGATGACCCCCTTTGCCATTGGAAGCCTGATGTGCAGAGAATCCTTGAACAAGGAGTCTGTGATTGAGGGAATTGTGAAAGCAGCTCTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTTCTTGATGCTGTTTCTGATATCATGGACCAGCACCTTGATGAGATCACCAGTTCCATTTCTTAA 1797 0.4162 MSSAGVSTLSPVPRESLLFPNGFHTPLHWSLDNQFIFIYLSYSGSLTPMRVLPSDTIESVKLKIQRNEGLPSLTNKQKLVCDGRELARSNSLLKDYGVTEGNVLHLVIRLTDLQTINVRTSCGKEFTFQVERCRDVGYVKQQIAKKEKQFADPEQQEVVCNGEWLDDQMLIDDICSKYNDVVIHLFVRLKFAEVKTGLDELSIVPTELNDTKSYDVNENDCRRKYDVSKEDTRREYEAIEKLVPRKALDRDLLLEPIIVNPKVELASEIGNMINSTYDGLDGGKYPIRSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVSAYILDHPMSGRRSLVGDNEKGFAGVPPTVMAKCFHKGFNHPGDLTAKIGSLQMFMENNGSCEDMGPGSFPVKEVHKITVLDMRLANADRHAGNILLSKEQENGHAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIKSLDAEEDISLLKFHGWDLPVECARTLQISTMLLKKGVERGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEATFLDAVSDIMDQHLDEITSSIS* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01636 598 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Rops4g01636 598 Pfam Ubiquitin family 42 110 IPR000626 GO:0005515
Rops4g01636 598 Pfam Phosphatidylinositol 3- and 4-kinase 292 542 IPR000403 -
Rops4g01636 598 SUPERFAMILY Ubiquitin-like 23 111 IPR029071 -
Rops4g01636 598 SUPERFAMILY Protein kinase-like (PK-like) 431 594 IPR011009 -
Rops4g01636 598 SUPERFAMILY Ubiquitin-like 109 189 IPR029071 -
Rops4g01636 598 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
Rops4g01636 598 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 45 565 IPR044571 -
Rops4g01636 598 Gene3D - 116 192 - -
Rops4g01636 598 CDD Ubl_ubiquitin_like 116 186 - -
Rops4g01636 598 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 577 IPR000403 -
Rops4g01636 598 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
Rops4g01636 598 Gene3D - 35 115 - -
Rops4g01636 598 SMART ubq_7 114 188 IPR000626 GO:0005515
Rops4g01636 598 SMART ubq_7 36 109 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01636 Rops-Chr4 39760780 39763839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01636 1 592 Acyl Lipid Metabolism Gene Families AT5G24240 54.774 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01636 - - gmx:100815111 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01636 4 39760780 39763839 Rops10g02106 10 38237053 38241098 ECH
Rops4g01636 4 39760780 39763839 Rops4g01636 4 39760780 39763839 ECH
Rops1g00667 1 16924958 16928066 Rops4g01636 4 39760780 39763839 ECH
Rops8g04249 8 85127108 85130003 Rops4g01636 4 39760780 39763839 PCT