Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04249 ATGTCATCTGCCGGTGTCACTACTCTTAGTCCGGTTCCCACTGAACCATTGTTATCTCCAAAGGCATTCCATTTCCCATCACATTTGTCTTTGGAAGATAAATCCATTTTCATATACCTCTCATTTTCGGGCTCATTGACTCCAATCCGTGTTATGGAGTGGGATACCATTGAGTCTGTAAAATTCAAAATCCAAAGGTGTGAGAGTCTTCCATTTTTAACAAACAAACAGAAGTTGGTTTATGCTGGCCGGGAACTAGCAAGGAGTGATTCTCTGCTCAAGGATTATGGAGTGACAGATGGGAATATTTTGCATTTAATAATCAAACTATCAGATCTTCAGGTCATCAATGTGAAAACTTCTAGTGGGAAGGAATTCACGTTTCAGGTGGAACGAAGTAGGGATGTTGGGTACATAAAGAGACGGATTGCCAAAAAGGAGAAACAATTTGATGATCCTGAGGAGCAGGAACTTGTGTGTAATGGGGAAAGGCTTGAGGACCAGAAGCTTATTGATGATATCTGCTGCAAGCATAATGATGCTGTGTTACATCTGTTTGTTAGAAAAAAGCATGCAAAAGTTCAGAGAAGACCCCTTGAGTTGTCTATTGTAGCAACAGATTTGACTGATGAGAAAAAAAATGATGTTGATGGAAATTCTTATAGGGGAAAATATGAAGTTGGTGAAGAAGACACTATTAGGAAGTCAGATGCCATTCAAAGAGTTGTGCCAAGAAAGCCTCCTGATAGAGATTTTATTTTGGAGCCAATCATTGTTAACCCTAAAGTTGAATTAGCTTCAGTGATTTGGGATATGGTAAACTCTACATATGATGGACTAGATAGTGGACATTATCCAATCAGATCTGCAGAGGGTACAGGGGGAGCTTACTTTATGCTTGATTCCACAGGGAAAAAGTATGTGTCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTGTGAATAACCCTCGAGGTCTTCCTCTTTCACCGGATGGTGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGAGCATTCAGGGAAGTTGCAGCTTATGTTTTGGACCATCCAATGAGTGGGCGCCGCTCATTATTTAGTGATGAGAAGGGCTTTGCTGGTGTTCCCCCAACTTGGATGGTTAAGTGCTTGTACAAAGGATTTAACCATCCAGGAGACTTGACTGCAAAGATTGGCTCCCTGCAGATGTTTGTGGAAAATAATGGAAGCTGTGAAGATATGGGCCCTGGGGCCTTCCCAGTAAAGGAAGTACATAAGATTACTGTATTGGACATAAGATTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGCTCAGCACAGAGGAGGACAGCAACCAGTCTGTTCTGATTCCAATTGATCATGGATATTGCTTGCCTACAAGTTTTGAAGATTGTACCTTTGAATGGCTTTACTGGCCCCAAGCTCGCCAGCCATACTCCCCAGAAACTATTGAATACATAAAGTCGCTGGATGCTGAAGAAGATATTTCCCTTTTGAAGTTTCATGGATGGGATCTGCCAGTTGAATGTGCCCGCACTCTTAGAATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGATTGACTCCTTTTGCCATTGGAAGCCTGATGTGCAGGGAATCCTTGAACAAGGAATCTGTTATAGAGGAAATAGTTCAAGCTGCGCTGGATTCTGTTCTTCCTGGAACAAGTGAAGCTACATTGCTTGATGCTGTTTCCCAAATCATGGACCAGCGCCTTGATGAGATTACCACCTCTCCTTTATAA 1794 0.4203 MSSAGVTTLSPVPTEPLLSPKAFHFPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDSLLKDYGVTDGNILHLIIKLSDLQVINVKTSSGKEFTFQVERSRDVGYIKRRIAKKEKQFDDPEEQELVCNGERLEDQKLIDDICCKHNDAVLHLFVRKKHAKVQRRPLELSIVATDLTDEKKNDVDGNSYRGKYEVGEEDTIRKSDAIQRVVPRKPPDRDFILEPIIVNPKVELASVIWDMVNSTYDGLDSGHYPIRSAEGTGGAYFMLDSTGKKYVSVFKPIDEEPMAVNNPRGLPLSPDGEGLKKGTRVGQGAFREVAAYVLDHPMSGRRSLFSDEKGFAGVPPTWMVKCLYKGFNHPGDLTAKIGSLQMFVENNGSCEDMGPGAFPVKEVHKITVLDIRLANADRHAGNILLSTEEDSNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPETIEYIKSLDAEEDISLLKFHGWDLPVECARTLRISTMLLKKGVERGLTPFAIGSLMCRESLNKESVIEEIVQAALDSVLPGTSEATLLDAVSQIMDQRLDEITTSPL* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04249 597 Pfam Ubiquitin family 38 110 IPR000626 GO:0005515
Rops8g04249 597 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Rops8g04249 597 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 576 IPR000403 -
Rops8g04249 597 SMART ubq_7 114 188 IPR000626 GO:0005515
Rops8g04249 597 SMART ubq_7 36 109 IPR000626 GO:0005515
Rops8g04249 597 ProSiteProfiles Ubiquitin domain profile. 116 173 IPR000626 GO:0005515
Rops8g04249 597 Gene3D - 115 202 - -
Rops8g04249 597 SUPERFAMILY Ubiquitin-like 35 110 IPR029071 -
Rops8g04249 597 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Rops8g04249 597 Pfam Phosphatidylinositol 3- and 4-kinase 292 541 IPR000403 -
Rops8g04249 597 CDD Ubl_ubiquitin_like 116 186 - -
Rops8g04249 597 SUPERFAMILY Protein kinase-like (PK-like) 433 594 IPR011009 -
Rops8g04249 597 Gene3D - 30 113 - -
Rops8g04249 597 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 46 566 IPR044571 -
Rops8g04249 597 SUPERFAMILY Ubiquitin-like 108 191 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04249 Rops-Chr8 85127108 85130003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04249 33 591 Acyl Lipid Metabolism Gene Families AT5G24240 56.714 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04249 - - gmx:100791631 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04249 8 85127108 85130003 Rops4g01636 4 39760780 39763839 PCT