Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2407 ATGACTCTAATGACTCCGCCTCCATTGGATCAACAGCAGCCGCAACCGCAGGAGCAGCCGCTGGAGGAACCGCTGGAGCAACCGCAGGAGCAGGATGAGATGCAGGTTCCTTACGGTCCTCAACCTATGGAAGCAGAAAGCACGAGTACAGTGGCTGCTCCAACAATGGATGATACACCGTCTGCAAAATTCACTTGGACCATTGACAATTTTTCAGAACTTCCTAAAAGAGTCTTTTCTGATGTTTTCTGTGTAGGAGGCTTTAACTGGCGGGTACTTATCTTTTCGAAGGGGAACAGTGTTGACCATCTATCAATGTATGTAGATGTTGCAGATGCAGCTAATTTGCCTTATGGTTGGAGTAAATATGCCCAGTTCAGCTTGACTGTTGTCAATCAAATTCATAGTAAATTTTCAATAAGAAAAGAATCTCATCATCAGTTCAATGCGCGAGCGTGTGATTGGGGTTTTGCTAATTTCATGCCACTTGCTCAATTGTATGATCCTGCTAGAGGTTATCTTGTGAATGATACATTCGTAGTTGAGGCTGACATTGCTGTGCGTAAAGATATGGATTGGTCATATGACTCGAAAAAGGAAACTGGTTATGTTGGATTAAAAAACCAAGGAGCTACTTGTTATATGAATTCTCTGCTTCAAACACTGTACCACATTTCTTATTTCCGAAAGGCTGTGTACCAGATGCCCACGACTGAAAATGATTCACCATCAAGAAGCATACCTCTTGCATTACAGAGTTTGTTTTACAAATTGCAGTACAGTGACTGTAGTGTAGCAACGAAAGAGTTAACCAAGTCTTTTGGATGGGATACATATGATTCATTCATGCAGCATGATGTCCAAGAACTTAATAGGGTTCTTTGTGAGAAGTTAGAAGACAAAATGAAGGGAACTGTTGTAGAAGGCACTATTCAGAAATTGTTTGAAGGCCACCATATGAACTATATTGAATGCATCAATGAGGATTATAAATCAACAAGAAAGGAGTCATTTTATGATCTTCAGCTTGATGTCAAAGGCTGTAAGGATGTTTATGCTTCTTTTGATAAGTATGTGGAAGTGGAACGGCTTGAGGGTGATAACAAATATCATGCCGAGCACCATGGGTTACAGGATGCTAGGAAGGGTGTATTGTTCATCGATTTCCCACCTGTTCTACAGCTTCAATTAAAACGGTTTGAGTATGATTTTATGCGAGACACTATGGTAAAGATCAATGATCGCTATGAGTTTCCCTTGCAACTGGATCTTGATAGGGATAATGGCAAGTATCTATCTCCTGAAGCAGACAGAAGTATTCGGAATCTTTATTCACTTCACAGTGTTTTGGTTCACAGTAGTGGGGTGAATGGTGGACACTACTATGCTTACATTAGGCCAACACTATCAGATGAGTGGTTTAAGTTTGACGATGAACGAGTAACCAAAGAAGATGCAAAGAGGGCTTTAGAAGAACAGTATGGTGGCGAAGAGGAGATGAGATTAAGGAGAGAACAAGAAGAAAAAGATCTGAAGAGGAAGGAGAAGGCTGAGGCTCACTTGTACACCATCATAAAGGTTGCTCGTGATGAAGATCTGTGTGAGCAGATTGGAAATGATATATTCTTTGATCTGGTGGATCATGATAGAGTTCGAAGTTTTCGTATTCAAAAACAAGTGCCTTTTGTCATTTTCAAGGAAGAAGTTGCCAAAGAATTTGGTATACCCATCCAGTATCAACGTTTTTGGTTGTGGGCAAAGCGCCAAAACAACACATACAGGCCAAATAGAGCACTGACACCTCAGGAAGAAGCACAATCAGTTGGACTTTTGAGAGAAGTGTCCAATAAAGGAAATAATGCAGAGCTGAAGTTATTTTTGGAACTTGAAATGGGGAAGGATTTGCAGCCTATTCCTCCTCCCGAGAAGTCAAAAGAGAATCTCCTGCTTTTCTTTAAACTTTATGAACCTTCAAATGAAAAGCTTAGGTATGTTGGGCGGCTCTTTGTGATGTTCAGTGCGAAGCCAGTAGATATATTGGTAAAACTAAATGAAATGGCTGGATATGCTCCTGATGAAGAAATAGACATGTTTGAGGAGATAAAATTTGAACCTAATGTCATGTGTGAACGTCTTGACAAGAAATCCACATTCCGTGAGAGTCAGCTTGAAGATGGTGATATTATTTGCTTCCAGAAGTCCCACAAAACTGAAAACGAAGAGCAATATCGGTATCCAGATGTTCCTTCTTTCTTGGAATATGTGCATAACCGTGTGGTTGTTCGCTTTAGGATTTTGGAAAAACCAAAGGAGGATGACTTTAGTCTTGAGCTGTCAAAGCTTGACACCTATGACAATGTTGTTGAAGAAGTTGCTCAACATATTGGTTTGAATGATCCTTCTAAAATCAGACTCACATGTCATAACTGTTACTCCCAGCAACCTAAACCGCAGTCTATAAAGTACAGAGGAATAGAACATTTGTCGGACATGCTAATTCACTATAATCAGGCTTCTGATATTCTATACTATGAAGTATTGGATATCCCTTTGCCAGAATTGCAATGCCTAAAAACTCTTAAAATTGCTTTCCATCATGCTACCAAGGATGAAGTGGTGATTCATACTATTAGATTACCGAAGCATTGTATTGTGGCAGATGTAATTAATGATCTTAAATCGAAGGTAGATTTATCACATCCAGATGCAGAACTTAGATTGCTTGAAGTTTTCTATCACAAGATCTATAAGATTTTCCATATCAACGAAAGGATTGAGAATATTAATGATCAATATTGGACTCTTCGAGCAGAGGAGATTCCGGAGGAAGAGAAAAACCTTGGCCCTCATCATCGGTTGATCCATGTCTATCATTTCTTAAAAGACACTAATCAAAATCAGCAAGTTCAGAACTTTGGACATCCTTTTTTCTTAGTGATCCATGAGGGTGAGACATTAGCAGAAGTCAAATTGCGAATACAGAGCAAGTTGCAAGTTCCAGACGAGGAGTTTTCAAAGTGGAGATTTGCATTTTTGTCATTTGGTCGTCCTGAGTACCTTCAAGATTCAGATATTGTTTCCACTCGGTTTCAGAGAAGGGATATATATGGTGCGTGGGAGCAGTACCTCGGACTGGAACACACTGACAATACTCCTAAAAGATCCAATGCAGCCAATCAGAATCGTCACCCATACGAGAAGCCAGTAACAATTCATGTTTAG 3222 0.3994 MTLMTPPPLDQQQPQPQEQPLEEPLEQPQEQDEMQVPYGPQPMEAESTSTVAAPTMDDTPSAKFTWTIDNFSELPKRVFSDVFCVGGFNWRVLIFSKGNSVDHLSMYVDVADAANLPYGWSKYAQFSLTVVNQIHSKFSIRKESHHQFNARACDWGFANFMPLAQLYDPARGYLVNDTFVVEADIAVRKDMDWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHISYFRKAVYQMPTTENDSPSRSIPLALQSLFYKLQYSDCSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINEDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLEGDNKYHAEHHGLQDARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNGKYLSPEADRSIRNLYSLHSVLVHSSGVNGGHYYAYIRPTLSDEWFKFDDERVTKEDAKRALEEQYGGEEEMRLRREQEEKDLKRKEKAEAHLYTIIKVARDEDLCEQIGNDIFFDLVDHDRVRSFRIQKQVPFVIFKEEVAKEFGIPIQYQRFWLWAKRQNNTYRPNRALTPQEEAQSVGLLREVSNKGNNAELKLFLELEMGKDLQPIPPPEKSKENLLLFFKLYEPSNEKLRYVGRLFVMFSAKPVDILVKLNEMAGYAPDEEIDMFEEIKFEPNVMCERLDKKSTFRESQLEDGDIICFQKSHKTENEEQYRYPDVPSFLEYVHNRVVVRFRILEKPKEDDFSLELSKLDTYDNVVEEVAQHIGLNDPSKIRLTCHNCYSQQPKPQSIKYRGIEHLSDMLIHYNQASDILYYEVLDIPLPELQCLKTLKIAFHHATKDEVVIHTIRLPKHCIVADVINDLKSKVDLSHPDAELRLLEVFYHKIYKIFHINERIENINDQYWTLRAEEIPEEEKNLGPHHRLIHVYHFLKDTNQNQQVQNFGHPFFLVIHEGETLAEVKLRIQSKLQVPDEEFSKWRFAFLSFGRPEYLQDSDIVSTRFQRRDIYGAWEQYLGLEHTDNTPKRSNAANQNRHPYEKPVTIHV* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2407 1073 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 511 997 - -
Pvu7g2407 1073 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 82 502 - -
Pvu7g2407 1073 SUPERFAMILY Cysteine proteinases 199 499 IPR038765 -
Pvu7g2407 1073 SMART math_3 63 166 IPR002083 GO:0005515
Pvu7g2407 1073 MobiDBLite consensus disorder prediction 1048 1073 - -
Pvu7g2407 1073 Gene3D - 758 855 - -
Pvu7g2407 1073 ProSiteProfiles MATH/TRAF domain profile. 61 185 IPR002083 GO:0005515
Pvu7g2407 1073 CDD MATH 63 185 IPR002083 GO:0005515
Pvu7g2407 1073 MobiDBLite consensus disorder prediction 1 48 - -
Pvu7g2407 1073 Pfam MATH domain 68 186 IPR002083 GO:0005515
Pvu7g2407 1073 MobiDBLite consensus disorder prediction 1048 1063 - -
Pvu7g2407 1073 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 511 997 - -
Pvu7g2407 1073 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 82 502 - -
Pvu7g2407 1073 Coils Coil 497 517 - -
Pvu7g2407 1073 CDD peptidase_C19C 202 501 - -
Pvu7g2407 1073 SUPERFAMILY TRAF domain-like 58 190 - -
Pvu7g2407 1073 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 205 220 IPR018200 GO:0004843|GO:0006511
Pvu7g2407 1073 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 59 200 IPR008974 GO:0005515
Pvu7g2407 1073 Gene3D Cysteine proteinases 201 522 - -
Pvu7g2407 1073 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 580 832 IPR024729 -
Pvu7g2407 1073 Pfam Ubiquitin carboxyl-terminal hydrolase 204 490 IPR001394 GO:0004843|GO:0016579
Pvu7g2407 1073 Pfam Ubiquitin-specific protease C-terminal 842 1052 IPR029346 -
Pvu7g2407 1073 Gene3D - 640 757 - -
Pvu7g2407 1073 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 204 507 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2407 Pvu-Chr7 47411861 47442022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2407 204 481 Miscellaneous Gene Families AT4G31670 26.073 1.03e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2407 K11838 - gmx:100337655 1833.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2071 1 46538820 46540841 Pvu7g2407 7 47411861 47442022 ECH
Pvu7g2726 7 50224160 50227523 Pvu7g2407 7 47411861 47442022 ECH
Pvu7g2407 7 47411861 47442022 Pvu7g2407 7 47411861 47442022 ECH
Pvu1g2071 1 46538820 46540841 Pvu7g2407 7 47411861 47442022 PCT