Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g3973 ATGGGTCGCCTTATTTTCTTTCTCATCATTCTAACCTTCTTTACATTATCTTTCCTCTCAGAGGTACAGTCAACATCGTTCAAGATTGTAAACAAGTGCCGTCACACAATATGGCCAGGATTACTCTCAGGCGCCACCTCGCCGCCGCTACCCACTACCGGATTCACCCTCAAGAGCGGAGAGTCAAGGACTGTCAACATCCCGAAATCTTGGTCGGGTCGGTTATGGGCACGGACTCTCTGCGGCCGTGGCTCCGACGGGAAATTCTCGTGTGTCACCGCTGACTGTGGCTCTGGTAAAGTAGAGTGCGCTGGCGGTGGGGCTAAGCCGCCGGCATCTTTGGCGGAGTTCACCTTGAACGGAGCCGACGGGTTGGATTTCTACGACGTAAGTTTGGTCGACGGTTATAATCTTCCGATGCTGGTTGTGGCTAAAGGCGGGACTAAGGGAGGATGCAGCCCCACCGGATGTCTTGTTGATCTTAACGGAGGTTGCCCGGCGGATCTTAAGGTGGCGCGTGGTGATGGAAGTGGCGATAACGTTGCGTGTAGAAGCGCGTGTGAAGCTTTTGCGGATCCTCGTTATTGTTGTAGTGAGGCGTACTCTACGCCTGACACGTGTGCTCCTTCTGTATACTCGCAGTTTTTTAAGCATGCATGCCCACGCTCATATAGCTACGCGTATGATGATAAGACTAGCACATTCACGTGTGCCTCCGCTAACTATATGATCATATTTTGCCCCTTACCTTATACTAGCCAAAAAGTGTTGGGAGCACGGCAAGACGGGGCGCAGCTTCCTCTTGTAAACAAAACTATGATGTACTTAAAAACACGACATTCTAGTGGCTCTTCATCAACAGGCTGGAAGTATCACAGAGACTAG 885 0.5096 MGRLIFFLIILTFFTLSFLSEVQSTSFKIVNKCRHTIWPGLLSGATSPPLPTTGFTLKSGESRTVNIPKSWSGRLWARTLCGRGSDGKFSCVTADCGSGKVECAGGGAKPPASLAEFTLNGADGLDFYDVSLVDGYNLPMLVVAKGGTKGGCSPTGCLVDLNGGCPADLKVARGDGSGDNVACRSACEAFADPRYCCSEAYSTPDTCAPSVYSQFFKHACPRSYSYAYDDKTSTFTCASANYMIIFCPLPYTSQKVLGARQDGAQLPLVNKTMMYLKTRHSSGSSSTGWKYHRD* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g3973 294 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Psa7g3973 294 PIRSF PR5 1 287 IPR001938 -
Psa7g3973 294 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 7 259 - -
Psa7g3973 294 CDD TLP-PA 26 247 - -
Psa7g3973 294 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Psa7g3973 294 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Psa7g3973 294 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Psa7g3973 294 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Psa7g3973 294 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Psa7g3973 294 Pfam Thaumatin family 31 248 IPR001938 -
Psa7g3973 294 PANTHER OS03G0233200 PROTEIN 7 259 IPR001938 -
Psa7g3973 294 Gene3D Thaumatin 25 248 IPR037176 -
Psa7g3973 294 SMART tha2 27 248 IPR001938 -
Psa7g3973 294 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g3973 Psa-Chr7 328786295 328795947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g3973 5 248 Receptor kinase-like Gene Family AT5G38280 51.220 1.67e-86 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g3973 - - ccaj:109798931 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g3973 7 328786295 328795947 Psa7g3973 7 328786295 328795947 ECH
Psa7g3973 7 328786295 328795947 Psa2g3496 2 384281683 384283600 ECH
Psa5g0300 5 21800593 21811509 Psa7g3973 7 328786295 328795947 ECH
Psa7g3973 7 328786295 328795947 Psa4g2340 4 189275662 189277696 ECH