Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2340 ATGGAGACTTCAACTCAATTTGCTTTCACTCTTCTCTTTCTGTTTCTCTTTCATTCCATAAGAGGTTCAGATTCAGCCACATTTACAATTGTAAACAAGTGTAGCTACCCCGTTTGGCCGGGGATTTTGTCCGGTGCCGGGACGGCACAGTTAGTAACGACTGGTTTCGCCCTACAATCGGGCGAAACCAATGTTATAGCTGTGCCGACGGCTTGGTCAGGCCGCATATGGGGACGAACATTATGCTCAACAGACTCCGCCGGAAAATTCTCATGCGCAACCGGAGATTGCGGTTCTTCCAAAGTAGAATGCACTGGTAGTGGCGCAGTTCCACCAGCGACACTTGCGGAGTTCACGTTAAACGGTGCAGGAGGGATGGATTTCTACGACGTCAGCCTTGTAGACGGTTACAACCTTCCCATGACTATTGAACCGCGTGGCGGCGTCGGCAACTGCACGACGACGGGTTGTACGGCGGACTTGAATGAAGCGTGTCCGACGGAGCTGAAAGTGAAAATTTCAGTGGAAGAAGAAGAGAGCGGTGAGAAGAGCGTGGCGTGTAAAAGCGCGTGTGAAGCTTTTGGAGATCCGTTGTATTGCTGCAGTGGCGCTTATGCAACACCACAGACATGTAAACCAAGTGCGTACGGGCAGTACTTCAAGAACGCGTGCCCACGCGCTTATAGCTATGCTTACGATGATGGAACTAGCACCTTCACTTGTTCTTCCGCGGATTACCTCATTACTTTCTGTTCTACACCTTCCAAAAGTAAGTTGATAAAGTCAGGAGGGAATGGAAAATTCCCATTTGGAGTGGACATATGGGCAGGCGACGGGAATGGGCATGGTGATGAATCAACAAGCAAGGTGATGATGACATTATTAATTGGCGCTGTTCTAACGACAATTTTGTGA 915 0.4918 METSTQFAFTLLFLFLFHSIRGSDSATFTIVNKCSYPVWPGILSGAGTAQLVTTGFALQSGETNVIAVPTAWSGRIWGRTLCSTDSAGKFSCATGDCGSSKVECTGSGAVPPATLAEFTLNGAGGMDFYDVSLVDGYNLPMTIEPRGGVGNCTTTGCTADLNEACPTELKVKISVEEEESGEKSVACKSACEAFGDPLYCCSGAYATPQTCKPSAYGQYFKNACPRAYSYAYDDGTSTFTCSSADYLITFCSTPSKSKLIKSGGNGKFPFGVDIWAGDGNGHGDESTSKVMMTLLIGAVLTTIL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2340 304 SUPERFAMILY Osmotin, thaumatin-like protein 26 251 IPR037176 -
Psa4g2340 304 Pfam Thaumatin family 32 251 IPR001938 -
Psa4g2340 304 ProSiteProfiles Thaumatin family profile. 25 251 IPR001938 -
Psa4g2340 304 PANTHER OS03G0233200 PROTEIN 12 271 IPR001938 -
Psa4g2340 304 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 12 271 - -
Psa4g2340 304 CDD TLP-PA 27 251 - -
Psa4g2340 304 Gene3D Thaumatin 26 252 IPR037176 -
Psa4g2340 304 PIRSF PR5 1 280 IPR001938 -
Psa4g2340 304 SMART tha2 28 252 IPR001938 -
Psa4g2340 304 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Psa4g2340 304 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Psa4g2340 304 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Psa4g2340 304 PRINTS Pathogenesis-related protein signature 242 251 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2340 Psa-Chr4 189275662 189277696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2340 7 256 Receptor kinase-like Gene Family AT5G38280 52.490 1.00e-87 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2340 - - gmx:100809419 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3496 2 384281683 384283600 Psa4g2340 4 189275662 189277696 ECH
Psa4g2340 4 189275662 189277696 Psa4g2340 4 189275662 189277696 ECH
Psa7g3973 7 328786295 328795947 Psa4g2340 4 189275662 189277696 ECH