Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0300 ATGGATCAATTAAGTACAAAATTATTCTTATTTTTCCTCACACTTTATCTTTCATCATCACTGGTGATATCAACAACCTTCATATTTGTTAACAAATGCAACTACACAGTTTGGCCGGGACTTCTTTCCAACGCCGGAATTGCGCCGATTTCAACCACCGGTTTCGTTCTCCAATCCGGCGATTCTAAATCAATCACTCCACCCGCTTCCTGGGGAGGCCGTTTCTGGGGACGCACACACTGTTCCCAAGACTCCACCGGAAAATTCACTTGCCTCACCGGCGATTGTAACTCCGGTAAACTTGAATGCTCCGGCAACGGAGCCACACCACCTGCTACCTTAGCGGAGTTCACTCTCGACGGATACGGTGGACTCGATTTCTTCGACGTGAGTTTAGTTGACGGTTACAACGTGCCTATGTTGGTCGTTCCACAAGGTGGCTCCGGTGATAACTGTACGAGTACTGGTTGCGTTGGGGATTTACTCACCGCCTGTCCATCAGAGCTTAGGGTTACGAGCGTGGACGGGAAAGAGAGCGTCGCGTGTAGAAGTGCGTGTGAGGCGTTTGGATCGGCGCAGTATTGTTGCAGCGGCGCGTATGGTTCGCCTAACACTTGCAAGCCTTCGAGTTATTCTCAGATGTTTAAGAACGCTTGCCCACGCGCGTATAGCTACGCGTACGATGATAAGACTAGCACGTTTACATGTGCTTCTGCTTCTGAATACATAATCACGTTTTGCCCTCCCGCTAATAGCAAGTTCCCCAGTCAGAAATCGTGGCAGGGACAAAATCCGAAATCAGATGGCAGTGATTCATCCGCGCAGCTTAACAACGGTTCAATGGTGTACGTTGGTGCCTATGATCAGAGTGAAATATCATGCTCGACTTGTATCCATATATGGAAATCCAAAACCCTTCTCACTATCACAACGGCTATGTGGTTCTTGTGTCACATTTTCCAGTTCTAA 969 0.4819 MDQLSTKLFLFFLTLYLSSSLVISTTFIFVNKCNYTVWPGLLSNAGIAPISTTGFVLQSGDSKSITPPASWGGRFWGRTHCSQDSTGKFTCLTGDCNSGKLECSGNGATPPATLAEFTLDGYGGLDFFDVSLVDGYNVPMLVVPQGGSGDNCTSTGCVGDLLTACPSELRVTSVDGKESVACRSACEAFGSAQYCCSGAYGSPNTCKPSSYSQMFKNACPRAYSYAYDDKTSTFTCASASEYIITFCPPANSKFPSQKSWQGQNPKSDGSDSSAQLNNGSMVYVGAYDQSEISCSTCIHIWKSKTLLTITTAMWFLCHIFQF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0300 322 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Psa5g0300 322 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Psa5g0300 322 PIRSF PR5 1 290 IPR001938 -
Psa5g0300 322 SUPERFAMILY Osmotin, thaumatin-like protein 25 249 IPR037176 -
Psa5g0300 322 CDD TLP-PA 26 247 - -
Psa5g0300 322 SMART tha2 27 248 IPR001938 -
Psa5g0300 322 Gene3D Thaumatin 25 248 IPR037176 -
Psa5g0300 322 PANTHER BNAA02G17480D PROTEIN 10 271 - -
Psa5g0300 322 PANTHER OS03G0233200 PROTEIN 10 271 IPR001938 -
Psa5g0300 322 Pfam Thaumatin family 31 248 IPR001938 -
Psa5g0300 322 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Psa5g0300 322 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Psa5g0300 322 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Psa5g0300 322 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0300 Psa-Chr5 21800593 21811509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0300 9 267 Receptor kinase-like Gene Family AT5G38280 50.570 2.72e-87 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0300 - - gmx:100780102 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0300 5 21800593 21811509 Psa7g3973 7 328786295 328795947 ECH
Psa5g0300 5 21800593 21811509 Psa2g3496 2 384281683 384283600 ECH
Psa5g0300 5 21800593 21811509 Psa5g0300 5 21800593 21811509 ECH