Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1950 ATGAGAACAGGAAATTGTTCTTTGCAACAAGGCCTAACTACAGATGCTGCAAACATAGTAAAGCAAGCAATAACCCTAGCAAAGCGTCGCGGCCATGCTCAAGTGACACCTCTCCATGTTGCAAACACCATGCTTAGTGTTACTAATGGTTTATTAAGAACAGCTTGTCTTCAATCTCATTCTCACCCTCTTCAATGTAAAGCTTTAGAGCTTTGCTTCAACGTCGCACTCAATCGCTTGCCAGCGACGAATTCTAGCCCTATGTTAGGTTCTCATCATTCTCAATCTCAGTATCCTTCTTTCGCAAATGCTTTGGTTGCTGCCTTTAAGCGCGCTCAAGCTCATCAACGCCGCGGATCGATTGAGAATCAACAACAACCGCTTTTGACGGTGAAGATTGAGCTTGAGCAACTCATTATTTCAATTCTTGATGATCCTAGTGTTAGTAGGGTTATGAGAGAAGCAGGGTTTAATAGTACTCAAGTGAAAACCAATGTTGAACAAGCTGTTTCCTTGGAGAACACTTCTTCTATAAAGGAAAGCAATGATCAAACTCTTTCTTCTCAATCTCAAGAAAAAGTTTCCAACAAAGCATTGGTTTTGGATCCAATTAGGGTTGAGGATATCAACAGTGTTGTTGATAACTTAAAGATGAATCAAAGAAAAAGTGTTGTTGTTGTTGGAGAGTGTGTGACTAATCTTGAAGGTGTAGTTAAAGGAGTGATGGAAAAATTTGATAAAGGAGAAGTTGATGAGTCACTTAAAGGTGTTAAGTTTATCTCACTTTCTCTTTGTGATTTTGGCAATGTTTCAAGGGTAGAAGTTGAAGAAAAAGTTGAAGAGCTTAAGGGACTTGCAAAAAAGAGTTTTCATGGAAAAGGGTATGTTTTGTATCTTGGAGATCTTAAATATTTGTTTGATTACAAAAAGCAACAAGGGATTAGAGGCTATTATTCTTCTCTTGATCACATGATAATGGAGATAGGAAAACTTGTTAATAGTGTTGGAGAAAATGGAAAGTTTTGGTTGATGTGTATTGCTACTTTTCAAGCTTACATGAGATGCAAAAATGGACAACCATCACTTGAAACTATTTGGAATCTTCATCCTATCACTATTCCTGCAGGAAGCTTGAAATTCAGTCTCATCACTGACAGTGGTTTTGAAAATGAGTCAAGAACTGAAAAAGCTGAGAATAGAACAAGCTGGCTATTGCATGAAGGAGTAGGAGATGATCAACAGATAATTCAAAAACAACAAGAAACTGCTTATTTTGCAGAACCTTCAAGAAAAAATGAGACTGAAGTTAGAAGGAGCTTGCAGAGAATGAGTTCTTGTAAAAGTGATTCTTCAAGTTCAAGTCTTCCTGCATGGCTACAACAATACAAAAATGAGAATAAAGGAATCACCTACAATGATCAGGAGAACTGTGTTCAAGTGGGAGAGCTTTGCAAAAAGTGGAACAACTCTATGTGTGGTTCAATCCAAAAACAAACCTATCATGGTAATGATAAAATCCTCACATTATCTTCAGCATCACCTTCTTCATCCACTTCAGGTTTCTCCTATGAACAACAACAATATTATCCAAATGTGTCACAAAACGATCGCGATCACCATTTTTGGATTTCTCAAAGAGGAAGCAAGTTCAATGAACCTTGTAACCCTACTTCAGCTTCTTCTAGTGAGCTTATGGAAATGGAGCAACTAAACAAGTTCAAAGAACTCAATTTAGAGAACATGAGAACCCTATGTAATGCTTTGGAGAAAAAGGTTCCATGGCAAAAAGATATAATACCGGAAATCGCGAGCACGGTTTTGCAATGTCGATCCAGTTTGATAAAAAGAAAAGGAAACATGAGAAACATTTATCATGATCCTAAAGAAGAAACATGGTTGTTTTTCCAAGGTCTTGATTTGGAAGGTAAAGAGAAAATAGCAAAAGAATTGGCTAAGCTTGTGTTTGGATCTTACAATAACTTCACTTCAATATCACTTAGTAGTTTTGCTTCAACAAGAGGTGAATCAAGTGATGAAAGTAGAAACAAAAGATCAAGAGATGAAGCAAGTTGTAGTTTCATTGAGAGATTTGGTGATGCAATGTCTAATAATCCTCATAGGGTTTTTCTAGTTGAAGATATAGAGCAAGTTGATTATTGTTCACAAGTTGGTTTCAAAAGGGCTATTGAAAAAGGAAGAGTTTTGGATTCAAATGGTGAAGAGGTTGGATTTTGTGATGCTATTATTATTCTAAGTTGTGAAAGTTTTAGTTCAAGATCAAGAGTTTGTTCTCCTATACAAAGATCCTCTCAAGAAGACAAAGATGATGATGATGATGATGTTAATGTTGTTGCTTTGGAAGAGACAAGTTCTTATGTTTCTTTGGATTTGAATATTTCTATTGATGATAATTATGAGGAAGATGATAGGTCAGTGGATGAAATTGGGCTGGTTGAGTCTGTAGACAGAAATATTCTCTTCAAAATTCAGGAATTGTGA 2499 0.3641 MRTGNCSLQQGLTTDAANIVKQAITLAKRRGHAQVTPLHVANTMLSVTNGLLRTACLQSHSHPLQCKALELCFNVALNRLPATNSSPMLGSHHSQSQYPSFANALVAAFKRAQAHQRRGSIENQQQPLLTVKIELEQLIISILDDPSVSRVMREAGFNSTQVKTNVEQAVSLENTSSIKESNDQTLSSQSQEKVSNKALVLDPIRVEDINSVVDNLKMNQRKSVVVVGECVTNLEGVVKGVMEKFDKGEVDESLKGVKFISLSLCDFGNVSRVEVEEKVEELKGLAKKSFHGKGYVLYLGDLKYLFDYKKQQGIRGYYSSLDHMIMEIGKLVNSVGENGKFWLMCIATFQAYMRCKNGQPSLETIWNLHPITIPAGSLKFSLITDSGFENESRTEKAENRTSWLLHEGVGDDQQIIQKQQETAYFAEPSRKNETEVRRSLQRMSSCKSDSSSSSLPAWLQQYKNENKGITYNDQENCVQVGELCKKWNNSMCGSIQKQTYHGNDKILTLSSASPSSSTSGFSYEQQQYYPNVSQNDRDHHFWISQRGSKFNEPCNPTSASSSELMEMEQLNKFKELNLENMRTLCNALEKKVPWQKDIIPEIASTVLQCRSSLIKRKGNMRNIYHDPKEETWLFFQGLDLEGKEKIAKELAKLVFGSYNNFTSISLSSFASTRGESSDESRNKRSRDEASCSFIERFGDAMSNNPHRVFLVEDIEQVDYCSQVGFKRAIEKGRVLDSNGEEVGFCDAIIILSCESFSSRSRVCSPIQRSSQEDKDDDDDDVNVVALEETSSYVSLDLNISIDDNYEEDDRSVDEIGLVESVDRNILFKIQEL* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1950 832 SUPERFAMILY Double Clp-N motif 12 114 IPR036628 -
Psa6g1950 832 Gene3D - 9 171 IPR036628 -
Psa6g1950 832 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 831 - -
Psa6g1950 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 755 IPR027417 -
Psa6g1950 832 ProSiteProfiles Clp repeat (R) domain profile. 8 173 IPR004176 -
Psa6g1950 832 Gene3D - 189 374 IPR027417 -
Psa6g1950 832 Pfam Clp amino terminal domain, pathogenicity island component 25 51 IPR004176 -
Psa6g1950 832 Pfam Clp amino terminal domain, pathogenicity island component 133 170 IPR004176 -
Psa6g1950 832 Gene3D - 559 798 IPR027417 -
Psa6g1950 832 Coils Coil 564 591 - -
Psa6g1950 832 PANTHER PROTEIN SMAX1-LIKE 3 1 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1950 Psa-Chr6 121671192 121675434 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1950 - - mtr:MTR_1g057150 1306.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1950 6 121671192 121675434 Psa5g3014 5 232589407 232594981 ECH
Psa6g1950 6 121671192 121675434 Psa6g1950 6 121671192 121675434 ECH
Psa6g1950 6 121671192 121675434 Psa5g3667 5 288845302 288850413 ECH
Psa6g1950 6 121671192 121675434 Psa2g1342 2 102438143 102443644 ECH