Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3667 ATGCCGACGCCGGTAAGCACAGCGAGGCAATGCTTAACAGACGAAGCGGCGCGTGCACTAGACGAGGCAGTATCAGTAGCGCGTAGGCGAAACCACGCGCAAACAACATCTCTTCATGCCATCTCAGCTTTACTATCTTTACCTTCCAACATGCTACGCGACGCCTGCGCGCGTGCCGGAACTTCTCCTTACTCGCCGCGTCTTCAGTTTCGCGCCTTAGAGCTCTCCGTCGGCGTTTCCCTCGACCGCCTCCCGACTTGCAAAACCTCCTCCTCCTCGGCCTCCGCCTCCGCCGTCGTTGATGGTGGACCTCCGGTGTCGAACTCTCTCATGGCAGCTATTAAACGCTCTCAGGCGAATCAACGGCGGAATCCAGATAGCTTCCATTTGCTTCAGATTATGCAACAGCAACAGAATCAGCAGAGTCAAACGGCGTCGTTTTTGAAAGTTGAATTGAAGCATTTCATTCTTTCTATTCTTGATGACCCTATTGTTAGTCGTGTTTTCGCTGAAGCGGGTTTTCGTAGCTATGATATTAAATTCGTTTTGCTTCAACCTCCACTTCCTTCTAGATTCTTCCATCGACCTTCTCCTCCGGTTTTTCTCTGCAATATTGAACCGGAACCAGACCGGTTTCGGTTCGATGACAACTCCAGAAGGATTGTTGAGGTTATTGCTGGCAAGAGTCAGAGTAAAAGGAATCCTTTTTTGATGGGGGTGTATGCTAAAACCGCTCTGAAAAGAAAGGTTTGGTTAGTAGGGGTAGCAGGAACTTGTGATGTGTATTCAAAGTTTCTAAGGATGTTCCCTACGGTGGATAAGAATTGGGATCTGCATCTTCTGACTGTGACATCTGCTACTCCTTCTATGGAAGGACTCTACTCGAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGGTGGGTTCTTTTCCACACCTTCTGATTTCAGAAATCCCAATATATCTTTACCTCTTTGCGACACATGCAACGAAAAGTATGAACAAGAAGTTGCTGATAATTATCCCAAGGTAGGGCCTTCTACTTCCGCGTCAACAAGTTTACCTTGGTTACAAAAAGCGAACGTGGATTCAGATAAAGGATTGGGTTTGGCAAAGACTAATGAAGATAACACAAGTTTGAATGCCAAGATCTTAGAATTGCAAAGGAAATGGAGTGATATCTGTCAACATCTTCATCGAAACAAATTGTTACCTGAAATCAATGTTTCCCAAACATTAACAAGGTTCCAAGCTCCATTCCACGAGGGGTTTCGATTCGGTACAGGAACTGGTAACTTTAATGAAATCCACTGCTCTAATCCAATTCCCTACATGCCTAAAGAGTTGCAAAATCCATATCTATCTAAACAGATATTACCGTTTTCGCAACCTTTTGATACTAGTCTTATTGTCAATGATAAAACTGGACATGTACCGAACGTTTCAAAATTTGACACACAAAGTACTCGGGTTACCCCTTCTGTGACCACAGATTTGATTTTGGGAACTACATATACACTGGTTACTCATGAGCCAGATACTCCAAAAGTAAGCGATCATAAGAAGCATCTTCCGCACTTGTCAGATTCTCTTTCGACTGAATATGATGCTATGGTTGAGAGTACTTCAAACCAAATTGCTAGATCCTCTGGTCCAAATTCAGATGGAAAATTTGAAATGGTTGATTTCAAGTCACTTTACAAACTCCTTATCGAAAAGGTTTGGTGGCAAGAGGAGGCAATTTATGCTATCATTAGAATAATGACACTTTGTAGATCTGGTGGCGGAAAGCATAGTCGATCGAATTCAAATGTTAGAGCCGACACATGGTTTTCTTTCCTTGGACCAGACAGAGTTGGAAAAAGAAAAATTTCTTCAGAACTTGCAGAAACTCTATTTGGAAACAAACAAAACATAATCTCAGTGGATTTAAACTCTCAGGACAGGTTTCAACCATTGAACTTGGTTTATGAATGCCACAACATGCTTGGGAGGAAGACAGTTGTGGATTATATTGCTGGCGAGTTGAGTAAAAAGCCGCGTTCGGTTGTGTTTCTTGAAAATATAGATAAAGCTGATTTAATTGTGCAGAATAGTTTGTTCCACGCAATAAAAACGGGCAAATTTCCATACTCACATGGAAGGGAAATTAGTATGAACAATGCAATCTTTGTTGTGACCTCTTCTGTGTTCAAAGTTAGCGGCTTTTTCGATACGGAAAAGGAACCGATAATGTTTTCCGAGGAAACAATCCTTGAAGCTAAAAGATGTCAAATTGGATTATCTCTTGGACATGCTTCTGAGGATGTCGTCAGAAGCAGTAACACGAATGTGAGGGTTGCAAAGAGAAAAGGAACATTTCTGAATAAAAGAAAGCTAGTCGAAACTGAAAGTAGTGATTCCAATGAGAAAGTAACTAGCAAGACACCGAAACATGTCAAAGAGGCGTCACGGTCGTATCTTGATCTGAATATGCCTCTAGAGGAAGAAGTTGAAGAGGAAGTTGATTGTGATGACTGTGAAAGTGAATCTGTTGTTAAAAATCATGAAGCATGGTTAAACGATTTCGTTGATCAAGTTGATGGCAAAGTAGTTTTTAAGCCGTTCGATTTTGATTTACTTGCCGAGCAAGTAATCAAATGCATTGACAAACAATTTCAAACAACATTTGGATCAAATCATGTGCTGGAAATTGATTATGAGGTGATGTCACAGATACTTGCAGCTGCTTGGTTATCAGACAAGAAAAAAGCAGTGGAAGATTGGATTGAACATGTCCTTGGAAGTAGCTTTGTTGAAGCTCAAAAGAAGTATCAAAATGTAGCTGAGTGTGTCATGAAATTGGTTAAATGTGAAAGCATTTTTGTGGAAGAGCAAGCTCTAGGAGTATGCCTTCCACCTAGAATTAGCTTGAACTGA 2919 0.4166 MPTPVSTARQCLTDEAARALDEAVSVARRRNHAQTTSLHAISALLSLPSNMLRDACARAGTSPYSPRLQFRALELSVGVSLDRLPTCKTSSSSASASAVVDGGPPVSNSLMAAIKRSQANQRRNPDSFHLLQIMQQQQNQQSQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDIKFVLLQPPLPSRFFHRPSPPVFLCNIEPEPDRFRFDDNSRRIVEVIAGKSQSKRNPFLMGVYAKTALKRKVWLVGVAGTCDVYSKFLRMFPTVDKNWDLHLLTVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPSDFRNPNISLPLCDTCNEKYEQEVADNYPKVGPSTSASTSLPWLQKANVDSDKGLGLAKTNEDNTSLNAKILELQRKWSDICQHLHRNKLLPEINVSQTLTRFQAPFHEGFRFGTGTGNFNEIHCSNPIPYMPKELQNPYLSKQILPFSQPFDTSLIVNDKTGHVPNVSKFDTQSTRVTPSVTTDLILGTTYTLVTHEPDTPKVSDHKKHLPHLSDSLSTEYDAMVESTSNQIARSSGPNSDGKFEMVDFKSLYKLLIEKVWWQEEAIYAIIRIMTLCRSGGGKHSRSNSNVRADTWFSFLGPDRVGKRKISSELAETLFGNKQNIISVDLNSQDRFQPLNLVYECHNMLGRKTVVDYIAGELSKKPRSVVFLENIDKADLIVQNSLFHAIKTGKFPYSHGREISMNNAIFVVTSSVFKVSGFFDTEKEPIMFSEETILEAKRCQIGLSLGHASEDVVRSSNTNVRVAKRKGTFLNKRKLVETESSDSNEKVTSKTPKHVKEASRSYLDLNMPLEEEVEEEVDCDDCESESVVKNHEAWLNDFVDQVDGKVVFKPFDFDLLAEQVIKCIDKQFQTTFGSNHVLEIDYEVMSQILAAAWLSDKKKAVEDWIEHVLGSSFVEAQKKYQNVAECVMKLVKCESIFVEEQALGVCLPPRISLN* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3667 972 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 248 - -
Psa5g3667 972 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 249 972 - -
Psa5g3667 972 Gene3D - 543 777 IPR027417 -
Psa5g3667 972 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 248 - -
Psa5g3667 972 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 249 972 - -
Psa5g3667 972 ProSiteProfiles Clp repeat (R) domain profile. 8 190 IPR004176 -
Psa5g3667 972 Pfam AAA domain (Cdc48 subfamily) 611 730 IPR003959 GO:0005524|GO:0016887
Psa5g3667 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 730 IPR027417 -
Psa5g3667 972 Gene3D - 10 185 IPR036628 -
Psa5g3667 972 SUPERFAMILY Double Clp-N motif 12 132 IPR036628 -
Psa5g3667 972 Coils Coil 370 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3667 Psa-Chr5 288845302 288850413 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3667 - - gmx:100805591 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3667 5 288845302 288850413 Psa5g3667 5 288845302 288850413 ECH
Psa5g3667 5 288845302 288850413 Psa5g3014 5 232589407 232594981 ECH
Psa5g3667 5 288845302 288850413 Psa2g1342 2 102438143 102443644 ECH
Psa6g1950 6 121671192 121675434 Psa5g3667 5 288845302 288850413 ECH
Psa5g3667 5 288845302 288850413 Psa2g1342 2 102438143 102443644 PCT