Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1342 ATGGGGTCCTTTGTTCCATTTGGTGGATTCTTTTCTACACCTTCTGAAAGCAAAAGTCACGAAAGCTCTACAAATGCATCTTTTACTCGCTGCGACAAATGCAATGAAAAGTACGAACAAGAAGTTGCCGATGTTTTGAAGGTAGATCCGGCTACTCTGGCATCTAGTTGCTCAACAAGCTTGCCTTGGTTTAAAAAGGTTGTTGATGTGGATACACATGGAGGACTTGACGTGGCAAAGACTAATGAAGAAAATACAAGCTTGAATGATAAGATATTGGGATTTCAAAAGAAATGGAATGATATTTGTCAACAACTTCATCAAACAAGGTCTCAAGTTCCATCACTTGAGGTTTTTCGGCTTGGTTCAGATTTTAACGCAAGCAGCAGTAAAGGTCCATTACTTAATGGACTCCAATGTTCTAGTCCATTTTCCTACATGCCTAAAATGTTGCATGATACTTTTCCATCAAAACAGTTATCTCCGGCTCTATTACATACTGATACAGTCAGTGTTGATGTTAGAACTGATCATGTGCAAAGAGTCACAGAGACTCAGGAAATTGATTTGACGACTCCTTGGGCTGCTCCTTCACGTATGGCCAATAGGTGTGTGCTTGATAACAAATCATCTCCGTCCCTTACTTCTGTGGCCACAGATTTAGGACTGGGAACGTTATATACATCAACGCCAAATGCTTGCATGCCGGATACCCCAAGGTTTCAAGATAAAATAAAGCATTTTGAACGCGTGTCAGATTCTGCTTCAGCTGATTATGTTGCTATCCAGGGAAATACATCACACCAGATTGCTAGATCTTCCTGCTCTGTTTCAAACTTGTCAGCAAAATTTGATTCCATAGATTTCAAGTCTCTTAATAAACTTCTCTTTGAAAAAGTTGACTGGCAGGATCAGGCTGTATGTGATATCAGCCGAACTTTGCTCCTTCGAACATCCGGCGAAGGAAAGAATAGAGACTCTCATGGTAGAGAAGACATATGGTTTGCTTTCCTTGGGCCAGATAGAGTTGGAAAAAAGAAAATCGCTTCAACTCTTGCAAAGGCTATATTTGGAAATACAGAAAGTGTAATCTCTCTGGATCTAGGTTTCCAGGACAGGTTTTACCAGTCAAACTCAATTTTCGAATGCCAAAGATCATTTTCTTATGATGTGATTATTAGGAAGACAGTTGTGGACTATATTGCTGGGGAGTTGAGTAAAAATCCTCATTCCGTTGTCTTTCTTGATAATGTGGATAAAGCTGATTTTCTGGTGCAGAGTAATTTGTTGCAGGCAATAAGAAGAGGTAAATTTTCAGACTCACGTGGAAGAGAGATTAGTATCAGCAAAACAATCTTTCTTTTAACCTCGTCTGTCTGTCAAGGCAACGACTCTTTTGCTTGGAACGATGATAAAATGTTTTATGAGGAAACAATTCTTGAAGCCAAAAGATGCCAAATGCAGTTATTACTTGGAGATACATCCGAGGATGCCAAAAGAAGCTGTAGTACGAATATCAAGATTGTGCCGAGAAAAGGTTTTTCAAAAGCATCATTTCTCAACAAAAGAAAGCAGATTGATACCAGTGAATTCAAAGAGGGAACAACAAGCAAGATGCAAAAACAGGTTTCCAAGACACCAATGCCCAATCTGGATTTAAATATGCCTCTAGAAGAGGACGAAGAGGGTATGAACGACAACGACTGTGAACACAAGTCTGTAATGGATAGCTCAGACTCATGGTTTAGTGATTTATGCAATCAAATGGATGAAAAAGTGGTTTTCAAGCCATTCAATTTTGACGAGCTTGCCGAGAAATTACTAAAAAACATTAACATACAATTTGAAAGGACGTTTGGTTCAGAGTTTCAGTTGGAAATTGATTATGAGGTAATGACACAGATACTTGCAGCTGCTTGGTTAGCAGACAAGAAAAACTCAGTGGAGGATTGGGTAGAAAGTGTTCTTGGCAAAAGCTTTTTTGAAGCTCAGCAGAAATACCATCCTGCAGCTAAACATGTTGTAAAACTAATTAACTGTGAATCTATTTTTGAGGAAGATCCTGATCTTGGAGTATGCCTTCCAGCTAGCATTAACATAACGTAA 2106 0.3908 MGSFVPFGGFFSTPSESKSHESSTNASFTRCDKCNEKYEQEVADVLKVDPATLASSCSTSLPWFKKVVDVDTHGGLDVAKTNEENTSLNDKILGFQKKWNDICQQLHQTRSQVPSLEVFRLGSDFNASSSKGPLLNGLQCSSPFSYMPKMLHDTFPSKQLSPALLHTDTVSVDVRTDHVQRVTETQEIDLTTPWAAPSRMANRCVLDNKSSPSLTSVATDLGLGTLYTSTPNACMPDTPRFQDKIKHFERVSDSASADYVAIQGNTSHQIARSSCSVSNLSAKFDSIDFKSLNKLLFEKVDWQDQAVCDISRTLLLRTSGEGKNRDSHGREDIWFAFLGPDRVGKKKIASTLAKAIFGNTESVISLDLGFQDRFYQSNSIFECQRSFSYDVIIRKTVVDYIAGELSKNPHSVVFLDNVDKADFLVQSNLLQAIRRGKFSDSRGREISISKTIFLLTSSVCQGNDSFAWNDDKMFYEETILEAKRCQMQLLLGDTSEDAKRSCSTNIKIVPRKGFSKASFLNKRKQIDTSEFKEGTTSKMQKQVSKTPMPNLDLNMPLEEDEEGMNDNDCEHKSVMDSSDSWFSDLCNQMDEKVVFKPFNFDELAEKLLKNINIQFERTFGSEFQLEIDYEVMTQILAAAWLADKKNSVEDWVESVLGKSFFEAQQKYHPAAKHVVKLINCESIFEEDPDLGVCLPASINIT* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1342 701 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 700 - -
Psa2g1342 701 Gene3D - 267 597 IPR027417 -
Psa2g1342 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 639 IPR027417 -
Psa2g1342 701 Pfam AAA domain (Cdc48 subfamily) 333 465 IPR003959 GO:0005524|GO:0016887
Psa2g1342 701 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 700 - -
Psa2g1342 701 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 335 353 IPR001270 GO:0005524
Psa2g1342 701 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 414 432 IPR001270 GO:0005524
Psa2g1342 701 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 447 461 IPR001270 GO:0005524
Psa2g1342 701 CDD AAA 337 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1342 Psa-Chr2 102438143 102443644 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1342 - - gmx:100804458 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1342 2 102438143 102443644 Psa2g1342 2 102438143 102443644 ECH
Psa2g1342 2 102438143 102443644 Psa5g3014 5 232589407 232594981 ECH
Psa5g3667 5 288845302 288850413 Psa2g1342 2 102438143 102443644 ECH
Psa6g1950 6 121671192 121675434 Psa2g1342 2 102438143 102443644 ECH
Psa5g3667 5 288845302 288850413 Psa2g1342 2 102438143 102443644 PCT