Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0813 ATGCCGACGCCGGTCAGCGCAGCAAGGCAATGCTTGACGGAGGAGGCCGCTCGTGCTTTGGACGACGCCGTAGCGGTTGCTCGTCGCCGCAACCATGCGCAGACAACTTCGCTTCATGCTATCTCTGCCTTGCTCGCCTTGCCTTCTTCCACTCTCCGGGATGCTTGCACTCGCGCGCGTAGCTGCTCGTATTCTCCGCGTCTCCACTTCAAAGCTTTGGAGCTCTCTGTGGGTGTGTCTCTCGATCGATTGCCCACCACCAAGGCTCTCGAGGACGACCCTCCTATATCCAATTCACTCATGGCCGCTATTAAGCGATCCCAGGCGAACCAGAGGAGGCATCCAGAGAGTTTTCATCTGATACAGATGCATATGCATCAGCAACAACAAACGGCTTCGTTTTTGAAGGTGGAGCTCAAGCACTTCATCTTGTCCATTCTCGATGATCCGATTGTGAACAGAGTTTTCGGGGAAGCTGGTTTTCGAAGCTGTGACATCAAGCTTGCATTGCTTCAACCGCCTATAGCGCAAGCTTCGGCTCGATTCTTCCGGAGCCGTTACCCACCTTTATTTTTGGGCAATCTAACAGGTTTGGAAATGGATCGTTCAGGTTTCAACTTCCCTTTCATGGCCAATCCGGGACGCGAAGATGGAGATGAGAATTGTAGAAGAATTGCGGAGGTTTTTGTGAGGAAGACTAAGAAAAATCCCTTGCTGACGGGTGCTTACGCGAAGGGTGCTCTTCGGAGATTCACTGATTCTGTACAGAGAGGTCGAGTGGGTATGTTGCCGGCTGATATTGCTGGGGTTAAGATGATTTGCATTGAGAGGGAGATTGCTGCATTTTTTATTGAAGGTGGCTGTGAAGAGAAGATGGTTTTGAAATTTAAGGAATTGACTCGAGCAGTGGAGCAGTGCTCAGGTCCGGGTATCGTTGTGAATTTCGGAGAGCTCGAGCCATTCGTCGGGGATGGTGCGCCTGGTGTTGCTGTGAATTTTGTGGTCTCACAGTTGACAAGCTTACTGGAAATTCATGGCAAGAAATTATGGCTGGTCGGCATGGCAGGAACCTCTGTTGTATATTCCAAGTTTTTAACTATGTTCCCAACTGTGGAAAAGGATTGGGATCTGCATCTTCTGACCATGACATCTGCCTCCCCTTCAATTGAGGGTCTCTACTCTGAGTCCAGTTTGATGGGGTCCTTTGTGCCATTGGGTGGTTTCTTTTCTACACCACCTGAATTCAAAAACCCAGCAAGCTGTACAAATCAATCTTTGGCTCGCTGCCATGCGTGCAATGAGAAGTATGAACAAGAAGTTGCTGATATTTTGAAGGTAGGTCCTACAACTTCAGCATCTAGTCACTCAACAAGCTTGCCTTGGTTGCAACAGGTTAATGTGGATAAAGATAAACGATTGGATATTGCTGAGACCAATGAAGAATCCACAAGTTTGAATGCTACTTTGTTGGGATTGCAAAAGAAGTGGGCTGATAATTGTCGGCATCTTCATTGCACTGAGTCATTTCCTGACTTAAATATATCCCAAGCAAAGGCTCAACTGCCCTCTCTTGATGGCTTACAATTTGGTTTGGGTTTCAGAGAAAACAGCGGTAGAGATCGACCAGTTGATCGAATCCAACATTCCATTCATAGTAACTACATGCCTCAAGGGTTATGTAGTATTAACCCGTCAAAGCAGATGTTACAAGTTTCTTCAGGAACTTCTGTCATTAATAAGGGAACTGACAAGGGAGTAGTTGGTTCAAAGAGTCAGCGAACTGACGTGCAGAACCCTTGGGTTGCCCCTTCTCCTGTGGCTGATATGAGTCAGGCTGATCACAGATCATCTTCCTCCCTTACTTCTGTGACCACTGATTTGGGATTGGGAACGTTATATGCATCAGCAGCTCAGGAACCGGATACCCCGAAAGTAAATGATCATAGAGAGAGTATAAGGCATTTTTCAGACTCCATTTCAGCTGATCTTGATGCTGTGAATGAGAATACGTCGCACCAAATTGCTCAAACCTCTTCTTGTTCTGGTCCCATGGAAGGGAAATTGGATCCCATAGATTTCAAGTCACTTAACCAGCTTCTTGCTGAAAGAGTTAGCTGGCAAGCAGAGGCCATATCTGTTGTCAATCGAACTATGTCCCTCTGTAGATGTGGCACCAGAAAGAAGAGTGGCTCGCATGCTAGAGCAGATGTATGGCTTGCTTTCCTTGGTCCTGATAGAGTTGGAAAGAAGAAAATTGCTTTAGCACTTGCAGAGAAGATATTTGGAAACACTAAGAGGCTTATCTCTGTGGATATGAGTTCCCAAGACAGAGGCTACCCATTAAATGCAGTTTTTGAAAGCCAAAAGTCAATTTGTCATGATTTACTTTGGAGGAAGACAGTCGTGGACTATATTGCTGGGGAGTTGAGCAAACAACCCCATTCAGTTGTGTTTCTTGAAAATGTAGACAAAGCTGATTTTCTGGCGCAGAGTAGTTTGCTCCAGGCAATAAGAACAGGTAAATTTCCGGACTCACATGGCAGGGAAATCAGCTTCAATAATGCAATCATTATCGTAACTTCAAGTAGGTTCCAAGGCGAACCCTCTTTCTTTCTGGGGAAGGAGCATATGTTCTCTGAGGATAAAATCCTTGAAGCCAAAAGATATCAAATGCAGTTACTACTCGGACATTCTTCTGATGATACCATAAGAAGCATTAACACAAATGTCAGGGTAACACTGGGAAAAGAGGCCTCCAAACCAACAATTATAAATAAAAGGAAACTGAATGACAGAAGTGACTCTATGGAACAAGCAACAACATGTAAGGTACCGAAACAGTCCCTAGAGACATCCAGATCCTATCTAGATTTGAATATGCCTCTCCAGGAGGTTGAAGAGGGATGGTTTGATGATTTCTGTGGTCAACTTGATGCCAGAATAGCGTTTAAGCCCTTCAATTTTGATGCACTTGCTGAGAAAATTTTGAAAAGCATCAGCTCACGGTTTCAGAGGACATTTGGGTTAGGGATTAAGCTGGAAATTGACTATGAAGTCGTGATACAGATACTGGCAGCCGCTTGGTTATCTGAGAAGAAAAATTCTGTGGAGGATTGGGTTGAAAACGTACTCGGCAGGAGCTTCAATGAAGCCTTGCAGAAATACCAGCCTGAACCTAAGCATTTCATGAAACTAGTTACCTGTGAAGGGATTTTTGTGGAAGAGCAAGCTCCTGGAGTATGCCTTCCTGCTAATATTAACCTGAAATAA 3270 0.4526 MPTPVSAARQCLTEEAARALDDAVAVARRRNHAQTTSLHAISALLALPSSTLRDACTRARSCSYSPRLHFKALELSVGVSLDRLPTTKALEDDPPISNSLMAAIKRSQANQRRHPESFHLIQMHMHQQQQTASFLKVELKHFILSILDDPIVNRVFGEAGFRSCDIKLALLQPPIAQASARFFRSRYPPLFLGNLTGLEMDRSGFNFPFMANPGREDGDENCRRIAEVFVRKTKKNPLLTGAYAKGALRRFTDSVQRGRVGMLPADIAGVKMICIEREIAAFFIEGGCEEKMVLKFKELTRAVEQCSGPGIVVNFGELEPFVGDGAPGVAVNFVVSQLTSLLEIHGKKLWLVGMAGTSVVYSKFLTMFPTVEKDWDLHLLTMTSASPSIEGLYSESSLMGSFVPLGGFFSTPPEFKNPASCTNQSLARCHACNEKYEQEVADILKVGPTTSASSHSTSLPWLQQVNVDKDKRLDIAETNEESTSLNATLLGLQKKWADNCRHLHCTESFPDLNISQAKAQLPSLDGLQFGLGFRENSGRDRPVDRIQHSIHSNYMPQGLCSINPSKQMLQVSSGTSVINKGTDKGVVGSKSQRTDVQNPWVAPSPVADMSQADHRSSSSLTSVTTDLGLGTLYASAAQEPDTPKVNDHRESIRHFSDSISADLDAVNENTSHQIAQTSSCSGPMEGKLDPIDFKSLNQLLAERVSWQAEAISVVNRTMSLCRCGTRKKSGSHARADVWLAFLGPDRVGKKKIALALAEKIFGNTKRLISVDMSSQDRGYPLNAVFESQKSICHDLLWRKTVVDYIAGELSKQPHSVVFLENVDKADFLAQSSLLQAIRTGKFPDSHGREISFNNAIIIVTSSRFQGEPSFFLGKEHMFSEDKILEAKRYQMQLLLGHSSDDTIRSINTNVRVTLGKEASKPTIINKRKLNDRSDSMEQATTCKVPKQSLETSRSYLDLNMPLQEVEEGWFDDFCGQLDARIAFKPFNFDALAEKILKSISSRFQRTFGLGIKLEIDYEVVIQILAAAWLSEKKNSVEDWVENVLGRSFNEALQKYQPEPKHFMKLVTCEGIFVEEQAPGVCLPANINLK 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0813 1089 CDD RecA-like_ClpB_Hsp104-like 692 871 - -
Prci8g0813 1089 Pfam AAA domain (Cdc48 subfamily) 739 863 IPR003959 GO:0005524|GO:0016887
Prci8g0813 1089 Gene3D - 685 985 IPR027417 -
Prci8g0813 1089 MobiDBLite consensus disorder prediction 580 601 - -
Prci8g0813 1089 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1054 - -
Prci8g0813 1089 MobiDBLite consensus disorder prediction 580 599 - -
Prci8g0813 1089 ProSiteProfiles Clp repeat (R) domain profile. 8 178 IPR004176 -
Prci8g0813 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 1026 IPR027417 -
Prci8g0813 1089 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Prci8g0813 1089 Gene3D - 10 173 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0813 Prci-Chr8 5231502 5237009 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0813 - - gmx:100776148 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0813 8 5231502 5237009 Prci2g3005 2 37570826 37575713 CCT
Prci8g0813 8 5231502 5237009 Prci8g0813 8 5231502 5237009 ECH
Prci8g0813 8 5231502 5237009 Prci2g1821 2 13428110 13433792 ECH
Prci8g0813 8 5231502 5237009 Prci2g3005 2 37570826 37575713 ECH
Prci2g1821 2 13428110 13433792 Prci8g0813 8 5231502 5237009 ECH
Prci3g2795 3 39970307 39973952 Prci8g0813 8 5231502 5237009 ECH